Factsheet for GSMUA_Achr8P01790_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P13020_001
GSMUA_Achr7P03200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	GSMUA_Achr10P...	AT3G18690.1	15990873
AT2G38470.1	GSMUA_Achr6P13020_001	AT3G18690.1	15990873
AT2G38470.1	GSMUA_Achr7P03200_001	AT3G18690.1	15990873
AT2G38470.1	GSMUA_Achr10P...	AT3G18690.1	18650934
AT2G38470.1	GSMUA_Achr6P13020_001	AT3G18690.1	18650934
AT2G38470.1	GSMUA_Achr7P03200_001	AT3G18690.1	18650934
AT2G38470.1	GSMUA_Achr10P...	AT3G18690.1	21203436
AT2G38470.1	GSMUA_Achr6P13020_001	AT3G18690.1	21203436
AT2G38470.1	GSMUA_Achr7P03200_001	AT3G18690.1	21203436

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P09940_001	Banana	nucleus	32.81	51.09
GSMUA_Achr6P32720_001	Banana	nucleus	38.25	47.81
GSMUA_Achr11P...	Banana	nucleus	35.26	43.13
PGSC0003DMT400043204	Potato	nucleus	40.0	42.7
Bra005104.1-P	Field mustard	nucleus	34.21	42.67
Solyc06g066370.2.1	Tomato	nucleus	40.0	42.62
CDY65564	Canola	nucleus, plastid	34.74	42.04
KRH17125	Soybean	nucleus	42.28	41.91
CDX91470	Canola	nucleus, plastid	34.91	41.81
Bra017117.1-P	Field mustard	nucleus	33.68	41.47
KRH72765	Soybean	nucleus	42.11	41.38
CDY69941	Canola	nucleus, plastid	34.56	41.3
Bra000064.1-P	Field mustard	nucleus	34.21	41.23
CDY07729	Canola	nucleus	34.21	41.23
Os01t0826400-01	Rice	extracellular	39.82	40.9
KRG98195	Soybean	nucleus	38.77	40.77
TraesCS3D01G341100.1	Wheat	nucleus	40.0	40.64
TraesCS3B01G379200.1	Wheat	nucleus	39.82	40.61
CDY18383	Canola	nucleus, plastid	34.21	40.54
VIT_06s0004g07500.t01	Wine grape	nucleus	42.81	40.46
CDY14459	Canola	nucleus, plastid	34.74	40.41
Zm00001d043025_P001	Maize	nucleus	39.3	40.36
KRH30155	Soybean	nucleus	38.6	40.15
TraesCS3A01G347500.1	Wheat	nucleus	39.47	40.04
KXG33637	Sorghum	nucleus	38.6	39.57
AT2G38470.1	Thale cress	nucleus, plastid	34.91	38.34
HORVU3Hr1G088200.4	Barley	nucleus, plastid	39.65	37.73
CDY48650	Canola	nucleus, plastid	29.3	37.7
Zm00001d012482_P001	Maize	nucleus	38.77	37.27
GSMUA_Achr7P25840_001	Banana	nucleus	16.14	37.25
TraesCS1D01G292700.1	Wheat	nucleus, plastid	32.98	37.08
TraesCS1A01G298600.1	Wheat	nucleus, plastid	32.46	36.63
HORVU1Hr1G070250.2	Barley	nucleus, plastid	32.81	36.52
Os05t0474800-01	Rice	nucleus	36.49	36.36
TraesCS1B01G308200.1	Wheat	nucleus, plastid	32.46	36.35
GSMUA_Achr4P07230_001	Banana	nucleus	29.3	35.53
Zm00001d038451_P001	Maize	nucleus	34.39	35.19
GSMUA_Achr4P14270_001	Banana	nucleus	27.72	34.96
GSMUA_Achr10P...	Banana	nucleus	28.25	34.77
GSMUA_Achr7P26450_001	Banana	nucleus	28.6	34.1
GSMUA_Achr7P00610_001	Banana	nucleus	28.07	33.2
GSMUA_Achr4P13970_001	Banana	nucleus	29.47	32.75
GSMUA_Achr6P16760_001	Banana	nucleus	27.37	32.37
GSMUA_Achr5P23900_001	Banana	nucleus	30.7	30.97
OQU78174	Sorghum	nucleus	35.09	30.82
GSMUA_Achr6P03500_001	Banana	nucleus	27.72	30.68
GSMUA_Achr3P29850_001	Banana	nucleus	29.82	29.51
GSMUA_Achr1P17160_001	Banana	nucleus	21.23	29.44
GSMUA_Achr4P01600_001	Banana	nucleus	33.33	28.53
GSMUA_Achr5P04150_001	Banana	nucleus	31.58	28.44
GSMUA_Achr4P16840_001	Banana	nucleus	20.53	27.79
GSMUA_Achr11P...	Banana	nucleus	31.23	27.51
GSMUA_AchrUn_...	Banana	nucleus	21.58	26.86
GSMUA_Achr10P...	Banana	nucleus	20.35	24.52
GSMUA_Achr9P19580_001	Banana	nucleus	20.88	21.33

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr8G01790_001	EnsemblPlants:GSMUA_Achr8P01790_001	EnsemblPlants:GSMUA_Achr8T01790_001	InterPro:IPR003657
InterPro:IPR036576	UniProt:M0TLT1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000294900F	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G01790_001]

Coordinates

chr8:+:1370550..1372939

Molecular Weight (calculated)

61741.4 Da

IEP (calculated)

8.695

GRAVY (calculated)

-0.696

Length

570 amino acids

Sequence
(BLAST)

001: MSSSTSSSSM ETSAILQPPA FAFSELLAGA GGVDGDGGRD FPAFAGDSVP NFKSAPPPPS LAISRPPLSP SSWFAIPAGL SPALLLDSPV LFSSSNILPS
101: PTTGTLQALN RGISSADHRQ GNKDETIACS DISYQTNTEP QNFETASFQT CGSAIAVEGA FKTHRRCNYH HETSNNIKVE AVAPTFQSEL RAHHGQTDHD
201: RSSQAPLTLE EQRKFDDGCH WRKYGEKQVK GSDNPRSYYK CTYPSCPRKK QVERSSDGQI TEIVYKGTHS HSKPQSTTRH SAAVQAIHDA APPEASEASF
301: GGPDNSSASF GDSIIDLSSR RSNRGGEALD ETEPDAKRWK TEGDHEELSA PGNRATREPR VVVQTQSDVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTT
401: MGCPVRKHVE RASQDPSSVI TTYEGKHNHD VPAARGSGAH LQSRPQPEDY GTATAVRPSF MAGHASQIAA YDAFGASGVY VSGYRSSLLC SSRFGCKLPV
501: ILKLKFRSRA CVSGLLARRS KLRRVSPVDR RSPTGETRTR AAPGPASWAQ RVNGSRESGE RDFGYVSLVE

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.