Factsheet for GSMUA_Achr5P23900_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P19320_001
GSMUA_Achr5P06640_001
GSMUA_Achr6P33100_001
GSMUA_Achr9P04280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	GSMUA_Achr10P...	AT2G43790.1	24830428
AT4G26440.1	GSMUA_Achr2P19320_001	AT2G43790.1	24830428
AT4G26440.1	GSMUA_Achr5P06640_001	AT2G43790.1	24830428
AT4G26440.1	GSMUA_Achr6P33100_001	AT3G45640.1	24830428
AT4G26440.1	GSMUA_Achr9P04280_001	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P03500_001	Banana	nucleus	46.55	51.07
GSMUA_Achr11P...	Banana	nucleus	55.4	48.38
Bra028939.1-P	Field mustard	nucleus	36.99	46.55
GSMUA_Achr5P04150_001	Banana	nucleus	52.04	46.45
GSMUA_Achr4P01600_001	Banana	nucleus	52.21	44.29
CDY11947	Canola	nucleus	44.96	44.25
CDY36788	Canola	nucleus	47.79	43.27
HORVU0Hr1G004890.10	Barley	nucleus	45.49	42.69
Bra002828.1-P	Field mustard	nucleus	48.5	40.71
GSMUA_Achr3P09940_001	Banana	nucleus	26.37	40.71
CDY49388	Canola	nucleus	48.32	40.69
HORVU7Hr1G049130.1	Barley	nucleus, plastid	17.35	40.0
HORVU5Hr1G072020.1	Barley	nucleus	47.79	39.94
CDX94335	Canola	nucleus	36.11	39.69
TraesCS5A01G258100.1	Wheat	nucleus	47.43	39.59
TraesCS5B01G257300.1	Wheat	nucleus	47.43	39.47
TraesCS5D01G266300.1	Wheat	nucleus	47.26	39.38
AT5G56270.1	Thale cress	nucleus	47.79	39.3
CDX89336	Canola	nucleus	36.81	38.95
Bra026438.1-P	Field mustard	nucleus	36.81	38.95
CDY69527	Canola	nucleus	36.99	38.49
Os08t0499300-01	Rice	nucleus	45.84	38.43
AT4G26440.1	Thale cress	nucleus	38.23	38.03
Bra019105.1-P	Field mustard	nucleus	35.58	38.0
CDY42736	Canola	nucleus	35.58	38.0
Zm00001d025669_P001	Maize	nucleus	44.25	37.71
TraesCS2B01G351600.1	Wheat	nucleus	48.14	37.26
TraesCS2D01G332300.1	Wheat	nucleus	47.79	36.73
CDY32799	Canola	nucleus	38.94	36.61
TraesCS2A01G330500.1	Wheat	nucleus	47.61	36.6
Zm00001d003331_P001	Maize	nucleus	45.31	36.42
OQU80981	Sorghum	nucleus	44.07	36.35
Os09t0481700-01	Rice	nucleus	40.71	36.33
KXG35872	Sorghum	nucleus	37.17	36.02
Zm00001d006001_P006	Maize	nucleus	36.28	35.71
TraesCS7D01G239800.2	Wheat	nucleus	39.65	35.67
TraesCS7B01G136400.2	Wheat	nucleus, plastid	39.47	35.23
GSMUA_Achr11P...	Banana	nucleus	29.03	35.19
KXG26525	Sorghum	nucleus	46.02	35.14
Zm00001d020881_P002	Maize	nucleus	36.28	34.8
TraesCS7A01G240800.1	Wheat	nucleus	39.47	34.26
GSMUA_Achr10P...	Banana	nucleus	27.96	34.13
GSMUA_Achr6P32720_001	Banana	nucleus	27.43	33.99
GSMUA_Achr4P13970_001	Banana	nucleus	30.8	33.92
GSMUA_Achr4P14270_001	Banana	nucleus	26.9	33.63
Zm00001d052847_P001	Maize	nucleus	43.36	33.61
GSMUA_Achr7P00610_001	Banana	nucleus	28.32	33.2
VIT_19s0015g01870.t01	Wine grape	nucleus	43.36	32.84
GSMUA_Achr7P25840_001	Banana	nucleus	14.34	32.79
GSMUA_Achr4P07230_001	Banana	nucleus	26.73	32.13
PGSC0003DMT400056952	Potato	nucleus	42.3	31.95
Solyc07g066220.2.1	Tomato	nucleus	41.59	31.8
GSMUA_Achr7P26450_001	Banana	nucleus	26.9	31.8
GSMUA_Achr6P16760_001	Banana	nucleus	27.08	31.74
GSMUA_Achr8P01790_001	Banana	nucleus	30.97	30.7
KRH62550	Soybean	nucleus	41.24	30.62
GSMUA_Achr1P17160_001	Banana	nucleus	21.77	29.93
GSMUA_Achr3P29850_001	Banana	nucleus	30.44	29.86
KRH56379	Soybean	nucleus	40.53	29.51
GSMUA_Achr4P16840_001	Banana	nucleus	21.42	28.74
GSMUA_AchrUn_...	Banana	nucleus	21.06	25.98
Os04t0471700-00	Rice	nucleus	44.6	25.25
GSMUA_Achr10P...	Banana	nucleus	19.11	22.83
GSMUA_Achr9P19580_001	Banana	nucleus	20.35	20.61

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr5G23900_001	EnsemblPlants:GSMUA_Achr5P23900_001	EnsemblPlants:GSMUA_Achr5T23900_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0T165	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000295D2F0	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	:	:

Description

Probable WRKY transcription factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G23900_001]

Coordinates

chr5:+:25450519..25455715

Molecular Weight (calculated)

62224.7 Da

IEP (calculated)

7.207

GRAVY (calculated)

-0.686

Length

565 amino acids

Sequence
(BLAST)

001: MISDRSQFHI VKSNWSGAHK LNSHGGLAER ISASGFNVPK LNTARIGQEK MASSSSDVRS PYLTIPPGLS PTSLLESPVF LSNSMAQPSP TTGKLHFAQN
101: NIAGPASMSV SSSRIKSNDL LEDAPEAFAF KPLLELHSSF YSSSERMVAP GLSQPQTLSS ITVPVQLGKP KETGTLEAGP MHSQNQHEFN LQADSKDATD
201: SIMFKHSMPD SFMGSDHALP LDDEQDGDRD LKGEPSSVAV GAPAKDGYNW RKYGQKQVKG SEYPRSYYKC THPNCQVKKK VERSLEGHIT EIIYKGTHNH
301: PMPPPNRRSG VLLSHPFNDP EIDGSAQTGS QMNSDSKTMW TTRNMGNEEQ DWQARLSSDA IDVSSTMSNE EDEDDRATHG SVSLGCDGEG DETESKRMKL
401: DTTAIEMSAA SRAVREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHPG CNVRKHVERA AHDLKSVITT YEGKHNHDVP AARNSNHPGS
501: IPSGTISNTA APHEPHGLLP RVESAQGGLF LYNSFNYIIV RHMLYLNRVH INFKLLHAVY FNLSA

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.