Factsheet for PGSC0003DMT400056952

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400077272

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	PGSC0003DMT400077272	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g066220.2.1	Tomato	nucleus	93.72	94.86
VIT_19s0015g01870.t01	Wine grape	nucleus	65.24	65.42
KRH62550	Soybean	nucleus	58.96	57.95
KRH56379	Soybean	nucleus	58.96	56.83
Bra028939.1-P	Field mustard	nucleus	26.87	44.77
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	9.63	44.72
CDY11947	Canola	nucleus	32.62	42.51
CDY36788	Canola	nucleus	35.29	42.31
GSMUA_Achr5P23900_001	Banana	nucleus	31.95	42.3
CDX94335	Canola	nucleus	28.34	41.25
PGSC0003DMT400043204	Potato	nucleus	28.88	40.45
GSMUA_Achr6P03500_001	Banana	nucleus	27.81	40.39
Bra002828.1-P	Field mustard	nucleus	35.7	39.67
AT5G56270.1	Thale cress	nucleus	36.23	39.45
CDY49388	Canola	nucleus	35.29	39.34
Bra026438.1-P	Field mustard	nucleus	27.94	39.14
CDX89336	Canola	nucleus	27.94	39.14
GSMUA_Achr11P...	Banana	nucleus	33.16	38.33
PGSC0003DMT400030388	Potato	nucleus	20.72	37.99
GSMUA_Achr5P04150_001	Banana	nucleus	31.82	37.6
CDY69527	Canola	nucleus	27.27	37.57
Bra019105.1-P	Field mustard	nucleus	26.34	37.24
CDY42736	Canola	nucleus	26.34	37.24
GSMUA_Achr4P01600_001	Banana	nucleus	33.02	37.09
AT4G26440.1	Thale cress	nucleus	28.07	36.97
CDY32799	Canola	nucleus	28.74	35.77
PGSC0003DMT400072836	Potato	nucleus	24.2	35.63
PGSC0003DMT400076670	Potato	nucleus	26.87	32.9
PGSC0003DMT400060042	Potato	nucleus	20.05	32.82
PGSC0003DMT400057409	Potato	nucleus	26.07	32.72
PGSC0003DMT400014220	Potato	nucleus	22.33	32.36
PGSC0003DMT400003637	Potato	nucleus	19.39	32.15
PGSC0003DMT400015754	Potato	nucleus	17.38	30.81
PGSC0003DMT400028530	Potato	nucleus	17.25	27.62
PGSC0003DMT400029328	Potato	nucleus	25.13	26.97
PGSC0003DMT400029069	Potato	mitochondrion	3.88	23.77
PGSC0003DMT400074158	Potato	nucleus	17.11	23.32

Protein Annotations

EntrezGene:102590856	MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1C047
PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400022143	PGSC:PGSC0003DMG400022143	EnsemblPlants:PGSC0003DMT400056952	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002955AB1	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_006346068.1	RefSeq:XP_006346069.1	RefSeq:XP_015163627.1	RefSeq:XP_015163628.1	SEG:seg	:

Description

WRKY DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022143]

Coordinates

chr7:-:56123389..56127931

Molecular Weight (calculated)

81045.4 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.814

Length

748 amino acids

Sequence
(BLAST)

001: MGGFDDHVAI MGDWMPPSPS PRTFFSSLLG DDVGSRSSFE GTNETSGNLA SGPQEHVGNS DRNDGAQAAI SEPQPVKFSA LSDQKMSSRG GGLLERIAAR
101: AGFNAPKLNT ESLRPADLMQ NQGVRSPYLT IPPGLSPTTL LESPVFLSNS LVQPSPTTGK FLFSSGIENR NSALMMEDTD KRKDNALESI NSSSFSFKPV
201: PETAPSLFPG TTSRSWLQVN PSNFSQQGFP NIEVSVHSQN SLVSHRVEAT QNPTQSGTLQ QSSDFPRFSA EKDVMGNNVT LESRTFQTVG SAVDHSPPLD
301: EPQDEDIDQR GGGDPNVAGA PAEDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSPEGHITEI IYKGAHNHPK PPPNRRSALG STNSLGDLQL
401: DGAEQGASGV NGDLGQANFQ KAPGAGGGFD WRNNNLDATS SANLGSEYCN RSAPFSAQNN TRLESGDAVD VSSTFSNDED EDDRGTHGSV SQGYDGEGDE
501: SESKRRKLET YSADMTGATR AIREPRVVVQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTSAGCN VRKHVERASH DLKSVITTYE GKHNHDVPAA
601: RNSSHVNSGA SNTHPTSVTG PAQNHLHRPE AAQLQNAMAQ FDRQPSLGSF GLSRRPQLGP NPGFSYGMNQ QGGLSSLAMA GFHPNQNKPG EFHMHPYLGQ
701: PRPMHDMGFM FPKEEPKVEP MSDPGLNLAN GSAVYQQFMN RLPLGPQM

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.