Factsheet for PGSC0003DMT400072836

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012770.2.1	Tomato	nucleus	97.44	97.44
VIT_01s0011g00220.t01	Wine grape	nucleus	66.14	66.93
CDY53941	Canola	nucleus	54.72	63.18
KRH70820	Soybean	nucleus, plastid	44.09	61.54
Bra026554.1-P	Field mustard	nucleus	55.31	59.16
CDY36419	Canola	nucleus	52.95	59.12
KRH74950	Soybean	nucleus	52.76	58.9
CDX98138	Canola	nucleus	52.95	58.86
CDY33788	Canola	nucleus	50.79	58.37
CDX96873	Canola	nucleus	52.36	57.08
KRG89512	Soybean	nucleus	49.02	56.72
KRH50544	Soybean	nucleus	49.21	56.56
Bra016716.1-P	Field mustard	nucleus	51.77	56.56
CDY62213	Canola	nucleus	51.57	56.47
CDY16122	Canola	nucleus	49.61	56.25
Bra026869.1-P	Field mustard	nucleus	52.76	55.83
AT2G03340.1	Thale cress	nucleus	56.1	55.56
Bra024780.1-P	Field mustard	nucleus	52.76	55.14
CDY45169	Canola	nucleus	52.56	54.94
AT1G13960.1	Thale cress	nucleus	55.51	54.86
CDY03003	Canola	nucleus	52.76	54.81
Bra019697.1-P	Field mustard	nucleus	52.95	54.56
CDY37191	Canola	nucleus	50.98	53.29
PGSC0003DMT400003637	Potato	nucleus	37.4	42.13
PGSC0003DMT400014220	Potato	nucleus	40.75	40.12
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	12.2	38.51
PGSC0003DMT400043204	Potato	nucleus	33.86	32.21
PGSC0003DMT400030388	Potato	nucleus	24.8	30.88
Bra030848.1-P	Field mustard	nucleus	12.2	30.54
CDY72350	Canola	nucleus	8.66	30.34
PGSC0003DMT400060042	Potato	nucleus	26.77	29.76
PGSC0003DMT400028530	Potato	nucleus	27.17	29.55
CDY62293	Canola	nucleus	11.61	29.06
PGSC0003DMT400015754	Potato	nucleus	23.43	28.2
CDY62292	Canola	nucleus	11.22	27.4
PGSC0003DMT400076670	Potato	nucleus	31.1	25.86
PGSC0003DMT400057409	Potato	nucleus	29.92	25.5
PGSC0003DMT400029069	Potato	mitochondrion	5.91	24.59
PGSC0003DMT400056952	Potato	nucleus	35.63	24.2
PGSC0003DMT400074158	Potato	nucleus	24.41	22.59
PGSC0003DMT400029328	Potato	nucleus	30.12	21.95

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1CR16	PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400028335
PGSC:PGSC0003DMG400028335	EnsemblPlants:PGSC0003DMT400072836	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF84	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0002963D5C	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Transcription factor WRKY2 [Source:PGSC_GENE;Acc:PGSC0003DMG400028335]

Coordinates

chr5:-:190450..195591

Molecular Weight (calculated)

55460.0 Da

IEP (calculated)

8.059

GRAVY (calculated)

-0.871

Length

508 amino acids

Sequence
(BLAST)

001: MAENEGSSSS STSRGQLLRP TITLPPRSSI ESLFSGGSSG ISPGPMTLVS SFFSDNDPDS ECRSFSQLLA GAMTPPAGFT GGRPGFPPLP QPSTAAITQS
101: PTTFTVPPGL SPTSLFDGFF SPGQGPFGMS HQQVLAQLTS QASQVQSQMH IQPNYPSSAT AAAPSMSQFQ SLPSNAAANR QIPPTLDPNI VKESSDVSLS
201: DQRSEPASFA VDKPADDGYN WRKYGQKQVK GSEYPRSYYK CTNPNCPVKK KVERSLDGQV TEIIYKGQHN HQPPQASKRS KECGNPNGNY NLQGPYELSS
301: EGLTGNFNKP KEGEPSYSLR MKDQESSQVN DQTSGSSDSE EVGNAETRVD GRDIDERESK RRAVEVQSTE AACSHRTVAE PRIIVQTTSE VDLLDDGYRW
401: RKYGQKVVKG NPYPRSYYKC TSQGCNVRKH VERAASDPKA VITTYEGKHN HDVPAARNSS HNTANNSMSQ LRPHNPVVDK PAAMRRADFQ RNEQQPIALL
501: RFKEEQST

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.