Factsheet for PGSC0003DMT400074158

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006170.1.1	Tomato	nucleus	72.13	95.42
PGSC0003DMT400015754	Potato	nucleus	45.9	59.72
VIT_12s0057g00550.t01	Wine grape	nucleus	30.97	42.18
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	10.75	36.65
CDX93073	Canola	nucleus	22.4	33.42
KRH74020	Soybean	nucleus	29.69	32.15
CDY50038	Canola	nucleus	24.95	31.42
KRH14103	Soybean	nucleus	28.96	31.3
Bra013187.1-P	Field mustard	nucleus	25.32	31.1
GSMUA_Achr7P25840_001	Banana	nucleus	13.66	30.36
AT2G04880.1	Thale cress	nucleus	25.14	28.34
PGSC0003DMT400043204	Potato	nucleus	24.23	24.91
GSMUA_Achr4P13970_001	Banana	nucleus	23.13	24.76
PGSC0003DMT400003637	Potato	nucleus	20.22	24.61
PGSC0003DMT400072836	Potato	nucleus	22.59	24.41
PGSC0003DMT400014220	Potato	nucleus	22.4	23.84
GSMUA_Achr3P29850_001	Banana	nucleus	24.41	23.26
PGSC0003DMT400060042	Potato	nucleus	18.58	22.32
PGSC0003DMT400076670	Potato	nucleus	24.59	22.09
PGSC0003DMT400028530	Potato	nucleus	18.4	21.63
PGSC0003DMT400030388	Potato	nucleus	16.03	21.57
PGSC0003DMT400029069	Potato	mitochondrion	4.74	21.31
KXG36569	Sorghum	nucleus	23.68	21.28
Zm00001d021947_P002	Maize	nucleus	23.5	21.04
Zm00001d006702_P001	Maize	nucleus	23.13	20.82
Os07t0583700-01	Rice	nucleus	23.32	20.71
PGSC0003DMT400057409	Potato	nucleus	22.4	20.64
TraesCS2A01G189700.1	Wheat	nucleus	21.49	19.28
TraesCS2B01G217400.2	Wheat	nucleus	21.49	19.22
HORVU2Hr1G036320.1	Barley	nucleus	21.13	18.86
TraesCS2D01G198100.4	Wheat	nucleus	21.31	18.34
PGSC0003DMT400056952	Potato	nucleus	23.32	17.11
PGSC0003DMT400029328	Potato	nucleus	20.95	16.5

Protein Annotations

EntrezGene:102605648	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1CT96	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG402028822	PGSC:PGSC0003DMG402028822	EnsemblPlants:PGSC0003DMT400074158	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000295C4D8	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006352011.1
SEG:seg	:	:	:	:	:

Description

Thermal hysteresis protein STHP-64 [Source:PGSC_GENE;Acc:PGSC0003DMG402028822]

Coordinates

chr12:+:6187851..6191565

Molecular Weight (calculated)

60483.4 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.983

Length

549 amino acids

Sequence
(BLAST)

001: MGTPKEEATD EVFSENLEQK PDPDSATRKL ELKADVVSGE LQKRLSQCDK GINVSQSNQE AISLSRVQEN QPEYVQKQQG VKSEADASGS SQLSSLPKDS
101: DAKSCGSESS VKDKVVSVLS GKASDSSDQM RSSNMEVFVS QSDLQRVSYT IKREKALDKL QPRRNPDTSA HGLMSDQGTT LLKAPEKPSE DGYNWRKYGQ
201: KLVKGNEFTR SYYKCTFPNC LAKKQVERSH DGHITDIHYI GKHEHPETLS VPQMSPEYVL PLQMKRPDIP IITALEAEGE KSSTPRETCE PSKPSEAPLA
301: LDIVSACDSV KVTPLKRHKL ENEVDKGDGQ DSKKQKKDTV ATDDTPPIKS HSEPRHIVQT VSEVDIINDG QRWRKYGQKI VKGNPNPRSY YRCSVAGCPV
401: KKHVERASHD PKLVITTYEG QHVHDFPTSR AISQISVAPD AGTADIREDS RIESGEKKHV VESKTESGET KHIRESKTEA SENKHVKESK AKSGENKHVG
501: ESKTESGGNK HAGESKPELG GNKHVGESIP ESGENKHVGL DMAVHIGAN

Best Arabidopsis Sequence Match ( AT4G26640.1 )
(BLAST)

001: MILLPEPSPT TGSLFKPRPV HISASSSSYT GRGFHQNTFT EQKSSEFEFR PPASNMVYAE LGKIRSEPPV HFQGQGHGSS HSPSSISDAA GSSSELSRPT
101: PPCQMTPTSS DIPAGSDQEE SIQTSQNDSR GSTPSILADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITDIIYKG THDHPKPQPG
201: RRNSGGMAAQ EERLDKYPSS TGRDEKGSGV YNLSNPNEQT GNPEVPPISA SDDGGEAAAS NRNKDEPDDD DPFSKRRRME GAMEITPLVK PIREPRVVVQ
301: TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTAHGCP VRKHVERASH DPKAVITTYE GKHDHDVPTS KSSSNHEIQP RFRPDETDTI SLNLGVGISS
401: DGPNHASNEH QHQNQQLVNQ THPNGVNFRF VHASPMSSYY ASLNSGMNQY GQRETKNETQ NGDISSLNNS SYPYPPNMGR VQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.