Factsheet for PGSC0003DMT400076670

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014610.1.1	Tomato	nucleus	93.78	93.78
PGSC0003DMT400057409	Potato	nucleus	69.89	71.64
VIT_19s0090g01720.t01	Wine grape	nucleus	54.99	56.95
KRH14276	Soybean	nucleus	53.03	55.38
KRH73864	Soybean	nucleus	53.03	55.1
KRH46302	Soybean	nucleus	50.9	53.9
KRG98564	Soybean	nucleus	50.41	53.38
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	13.58	51.55
Bra026414.1-P	Field mustard	nucleus	44.68	51.03
CDX94303	Canola	nucleus	44.35	50.94
CDX89317	Canola	nucleus	44.52	50.94
Bra028971.1-P	Field mustard	nucleus	40.1	50.52
CDY70490	Canola	nucleus	42.55	50.19
CDX92808	Canola	nucleus	43.04	50.19
AT4G26640.2	Thale cress	nucleus	45.34	49.73
CDX97359	Canola	nucleus	43.54	49.53
GSMUA_Achr4P13970_001	Banana	nucleus	41.57	49.51
CDY46692	Canola	nucleus	42.23	49.14
Bra010431.1-P	Field mustard	nucleus	43.54	48.81
CDY14304	Canola	nucleus	43.37	48.45
GSMUA_Achr7P25840_001	Banana	nucleus	19.31	47.77
GSMUA_Achr3P29850_001	Banana	nucleus	38.79	41.15
Zm00001d021947_P002	Maize	nucleus	41.08	40.95
Os07t0583700-01	Rice	nucleus	41.24	40.78
KXG36569	Sorghum	nucleus	40.75	40.75
Zm00001d006702_P001	Maize	nucleus	40.26	40.33
KRH49522	Soybean	extracellular, plasma membrane	16.53	40.08
PGSC0003DMT400043204	Potato	nucleus	32.08	36.7
Bra019095.1-P	Field mustard	nucleus	42.39	34.35
PGSC0003DMT400030388	Potato	nucleus	22.26	33.33
PGSC0003DMT400003637	Potato	nucleus	23.9	32.37
TraesCS2A01G189700.1	Wheat	nucleus	31.42	31.37
TraesCS2B01G217400.2	Wheat	nucleus	31.42	31.27
HORVU2Hr1G036320.1	Barley	nucleus	31.42	31.22
PGSC0003DMT400072836	Potato	nucleus	25.86	31.1
TraesCS2D01G198100.4	Wheat	nucleus	31.59	30.25
PGSC0003DMT400014220	Potato	nucleus	25.53	30.23
PGSC0003DMT400015754	Potato	nucleus	20.79	30.09
PGSC0003DMT400060042	Potato	nucleus	21.93	29.32
PGSC0003DMT400056952	Potato	nucleus	32.9	26.87
PGSC0003DMT400028530	Potato	nucleus	20.29	26.55
PGSC0003DMT400029069	Potato	mitochondrion	4.91	24.59
PGSC0003DMT400074158	Potato	nucleus	22.09	24.59
PGSC0003DMT400029328	Potato	nucleus	26.19	22.96

Protein Annotations

EntrezGene:102593445	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1CX70	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400029815	PGSC:PGSC0003DMG400029815	EnsemblPlants:PGSC0003DMT400076670	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000296C8EE	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006344883.1
SEG:seg	:	:	:	:	:

Description

WRKY transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400029815]

Coordinates

chr12:+:9730319..9737930

Molecular Weight (calculated)

65805.2 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.644

Length

611 amino acids

Sequence
(BLAST)

001: MEDSQSHSHS HPHQYTHSSP LPSINESSEQ VKFASSDAAF YPTVSSSVGS NIGAKYKLMS PAKLPISRSS ACITIPPGLS PSSFLESPVL LSNIKAEPSP
101: TTGSFSKFQL MQGSSGSAAF SFMRSCSSGN AYGETTGEFE FKFAIASSST SGSLAKEAAV ISAGFNQQQS EPLIQVQDRS LSQSLAPSTL VESEMPDSKE
201: LSLPAPVSLE ASSISTSAAA TDNEEINQRG QSNPSSQGSH ADNKDVSSVT AERSSEDGYN WRKYGQKLVK GSEFPRSYYK CTYPNCEVKK IFERSPDGQI
301: TEIVYKGSHD HPKPQPSRRF TPGALTSIQE DRGERDACLT GQEDKFNTNA QTSNTEPSGT PLSPRQAGGD GLEGTVSQLH SANDQVDEDD PFAKRRKMDG
401: GMDITPIVKP IREPRVVVQT VSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTNAGCPV RKHVERASHD PKAVITTYEG KHNHDVPAAR TNNHEMAGSA
501: PVTGGSRVRT EENGSVSLNL GVGIGYGMEN RRNGQLHNLP AETVHSQAQV SSSSMMVVQP ATVAACYNIV NGGMSRFGTI ENRVQGTGFE TLPLQSSAQC
601: PQNYGRILLG P

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.