Factsheet for Solyc12g014610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076670	Potato	nucleus	93.78	93.78
Solyc07g065260.2.1	Tomato	nucleus	69.72	71.48
VIT_19s0090g01720.t01	Wine grape	nucleus	54.83	56.78
KRH14276	Soybean	nucleus	52.37	54.7
KRH73864	Soybean	nucleus	52.37	54.42
KRH46302	Soybean	nucleus	51.06	54.07
KRG98564	Soybean	nucleus	50.57	53.55
Bra026414.1-P	Field mustard	nucleus	44.68	51.03
CDX94303	Canola	nucleus	44.35	50.94
CDX89317	Canola	nucleus	44.52	50.94
CDY70490	Canola	nucleus	42.88	50.58
Bra028971.1-P	Field mustard	nucleus	40.1	50.52
AT4G26640.2	Thale cress	nucleus	45.83	50.27
CDX92808	Canola	nucleus	43.04	50.19
CDX97359	Canola	nucleus	44.03	50.09
Bra010431.1-P	Field mustard	nucleus	43.86	49.17
CDY46692	Canola	nucleus	42.23	49.14
CDY14304	Canola	nucleus	43.7	48.81
GSMUA_Achr4P13970_001	Banana	nucleus	40.75	48.54
GSMUA_Achr7P25840_001	Banana	nucleus	19.31	47.77
Zm00001d021947_P002	Maize	nucleus	41.24	41.11
KXG36569	Sorghum	nucleus	40.92	40.92
Zm00001d006702_P001	Maize	nucleus	40.75	40.82
Os07t0583700-01	Rice	nucleus	41.24	40.78
GSMUA_Achr3P29850_001	Banana	nucleus	37.97	40.28
KRH49522	Soybean	extracellular, plasma membrane	16.2	39.29
Solyc06g066370.2.1	Tomato	nucleus	32.41	37.01
Solyc09g014990.2.1	Tomato	nucleus	29.79	34.4
Bra019095.1-P	Field mustard	nucleus	42.39	34.35
Solyc04g056360.2.1	Tomato	nucleus	21.11	32.17
TraesCS2A01G189700.1	Wheat	nucleus	31.59	31.54
Solyc02g088340.2.1	Tomato	nucleus	23.73	31.52
TraesCS2B01G217400.2	Wheat	nucleus	31.59	31.43
HORVU2Hr1G036320.1	Barley	nucleus	31.59	31.38
Solyc07g047960.2.1	Tomato	nucleus	21.11	31.23
Solyc05g012770.2.1	Tomato	nucleus	25.86	31.1
Solyc05g055750.2.1	Tomato	nucleus	23.08	30.72
Solyc03g104810.2.1	Tomato	nucleus	24.39	30.66
TraesCS2D01G198100.4	Wheat	nucleus	31.75	30.41
Solyc12g006170.1.1	Tomato	nucleus	20.29	29.88
Solyc10g084380.1.1	Tomato	nucleus	19.31	27.96
Solyc07g066220.2.1	Tomato	nucleus	31.91	26.39
Solyc10g005680.1.1	Tomato	nucleus	24.22	21.05
Solyc07g005650.2.1	Tomato	nucleus	16.37	19.49

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4DCZ6	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc12g014610.1	EnsemblPlants:Solyc12g014610.1.1
UniParc:UPI000276A96D	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:5610112..5616122

Molecular Weight (calculated)

65947.3 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.652

Length

611 amino acids

Sequence
(BLAST)

001: MEDSQSHSHS HPNQYNLSAP LLSINESSQQ LKFASSDAAF SHTVSSAVGS NTGARYKLMS PAKLPISRSS ACITIPPGLS PSSFLESPVL LSNIKAEPSP
101: TTGSFSKFQV MQGSSGSAAF SYLRSCSSGN VYGETTGEFE FKFAIASNST SGSLANEAAV ISAGSNQQQS EPLIQVQDRY LSQSLAPSVL VETEMPDSKE
201: LSLPAPVSLE ASSISTSAAA TDNEETNQRG QSNTSTQGSH ADNKDVSSIT AERSSEDGYN WRKYGQKLVK GSEFPRSYYK CTYPNCEVKK IFERSPDGQI
301: TEIVYKGSHD HPKPQPSRRF TPGVLTSIQE DRGERDACLT GQEDKFNTNA QTSNTEPGGN PLSPRQAGDD GLEGTVSQLH SANDQMDEDD PFAKRRKMDG
401: GMDITPIVKP IREPRVVVQT VSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTNAGCPV RKHVERASHD PKSVITTYEG KHNHDVPAAR TNNHEMAGSA
501: SVTGGSRVRT EENGSVSLNL GVGIGYGMEN RRNGQLHTLP AETAHSQVQV SSSSMMLVQP ATVAACYNIV NGGMSRFGTM ENRVQGTGFE TLPLQSSAQC
601: PQNYGRILLG P

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.