Factsheet for Solyc03g104810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014220	Potato	nucleus	94.24	88.76
Solyc02g088340.2.1	Tomato	nucleus	55.14	58.26
VIT_14s0108g01280.t01	Wine grape	nucleus	48.35	44.59
KRH01236	Soybean	nucleus	45.68	42.69
GSMUA_Achr4P14270_001	Banana	nucleus	39.3	42.26
KRH44949	Soybean	nucleus	45.47	42.26
GSMUA_Achr4P07230_001	Banana	nucleus	39.51	40.85
GSMUA_Achr10P...	Banana	nucleus	38.68	40.6
GSMUA_Achr6P16760_001	Banana	nucleus	39.92	40.25
GSMUA_Achr7P26450_001	Banana	nucleus	39.3	39.96
Solyc05g012770.2.1	Tomato	nucleus	40.53	38.78
EES16036	Sorghum	nucleus	37.24	36.49
Zm00001d041740_P001	Maize	nucleus	36.83	36.23
AT3G01080.2	Thale cress	nucleus	34.36	36.23
HORVU5Hr1G028340.1	Barley	nucleus	36.63	36.18
TraesCS5B01G108500.1	Wheat	nucleus	36.83	36.16
TraesCS5A01G104900.1	Wheat	nucleus	36.83	36.02
TraesCS5D01G116100.1	Wheat	nucleus	36.83	36.02
Zm00001d035323_P001	Maize	nucleus	36.21	35.48
Os12t0507300-00	Rice	nucleus	28.81	35.09
GSMUA_Achr7P00610_001	Banana	nucleus	34.77	35.06
EER94675	Sorghum	nucleus	34.98	34.14
CDX74281	Canola	nucleus	31.48	33.92
Zm00001d047309_P001	Maize	nucleus	34.57	33.8
TraesCS4A01G162500.1	Wheat	nucleus	33.74	33.61
TraesCS4B01G165900.2	Wheat	nucleus	33.33	33.26
TraesCS4D01G151700.1	Wheat	nucleus	33.13	33.2
Os07t0596900-00	Rice	nucleus	27.78	31.25
HORVU4Hr1G048400.1	Barley	mitochondrion	33.13	30.43
Os03t0444900-00	Rice	endoplasmic reticulum, golgi	23.05	30.03
TraesCS2D01G190500.1	Wheat	nucleus	27.78	29.48
TraesCS2B01G209200.1	Wheat	nucleus	28.19	29.27
TraesCS2A01G182700.1	Wheat	nucleus	27.98	29.25
HORVU2Hr1G034420.2	Barley	nucleus	26.95	29.24
Zm00001d029564_P001	Maize	nucleus	22.63	29.18
Solyc06g066370.2.1	Tomato	nucleus	32.1	29.16
Solyc04g056360.2.1	Tomato	nucleus	23.87	28.93
Solyc09g014990.2.1	Tomato	nucleus	30.66	28.17
Solyc10g084380.1.1	Tomato	nucleus	24.28	27.96
Solyc12g006170.1.1	Tomato	nucleus	23.25	27.23
Solyc07g047960.2.1	Tomato	nucleus	23.05	27.12
Solyc05g055750.2.1	Tomato	nucleus	25.31	26.8
Solyc07g065260.2.1	Tomato	nucleus	30.45	24.83
Solyc12g014610.1.1	Tomato	nucleus	30.66	24.39
Solyc07g066220.2.1	Tomato	nucleus	33.74	22.19
Solyc07g005650.2.1	Tomato	nucleus	21.81	20.66
Solyc10g005680.1.1	Tomato	nucleus	25.93	17.92

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4BJU4	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF84	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc03g104810.2	EnsemblPlants:Solyc03g104810.2.1
UniParc:UPI0002768B26	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:42987719..42993283

Molecular Weight (calculated)

53903.1 Da

IEP (calculated)

7.285

GRAVY (calculated)

-0.716

Length

486 amino acids

Sequence
(BLAST)

001: MGENFKAPSV SVSSLSTLTI PPKDSFFGGG NMPYFSPGPM TLVSTFFSES EYPSFSQLLA GAMASPLAKP PTLFPGEEEN CKQGYKQNRP MNLMVAQSPF
101: FTIPTAFTPS GLLNSPGFLS AVQSPFGMSH QQALAHVTAQ AALSQSYLQT QAECHFPSQS KSVQVLGASD PEESSLQPQL DTMSSDQKSK KFELPQLSQS
201: EDKPSFNSVD RPASDGYNWR KYGQKMVKAS ECPRSYYKCT HLKCLVKKKV ERSIDGHITE ITYKGHHNHE LPQPNKRRRD SCAQDGSDCS NINPETGTHT
301: ELEINGLNGA LVAHSEQVST EMACERSVSN ECEDAETAAS KEHDDEPNVK RMKTTVETPI LSSSHKAEPE SKIVVQTRSE VDILDDGFKW RKYGQKMVKG
401: NHHPRSYYRC TYPGCNVRKH VERASADPKA VITTYEGKHN HDIPIARNRS HSTAQNSSRQ LNEQEIATWR PAILEKVALH TSEIQV

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.