Factsheet for Solyc04g056360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055750.2.1	Tomato	nucleus	35.66	31.15
Solyc06g066370.2.1	Tomato	nucleus	37.41	28.04
Solyc09g014990.2.1	Tomato	nucleus	35.16	26.65
Solyc05g012770.2.1	Tomato	nucleus	33.17	26.18
Solyc12g006170.1.1	Tomato	nucleus	26.43	25.54
Solyc07g047960.2.1	Tomato	nucleus	26.18	25.42
Solyc10g084380.1.1	Tomato	nucleus	25.44	24.17
Solyc03g104810.2.1	Tomato	nucleus	28.93	23.87
Solyc02g088340.2.1	Tomato	nucleus	27.18	23.7
Solyc07g065260.2.1	Tomato	nucleus	32.17	21.64
Solyc12g014610.1.1	Tomato	nucleus	32.17	21.11
Solyc07g066220.2.1	Tomato	nucleus	35.16	19.08
Solyc07g005650.2.1	Tomato	nucleus	22.69	17.74
Solyc10g005680.1.1	Tomato	nucleus	27.43	15.65

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4BST4	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc04g056360.2	EnsemblPlants:Solyc04g056360.2.1
UniParc:UPI0002765C62	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:54133842..54135813

Molecular Weight (calculated)

45945.4 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.922

Length

401 amino acids

Sequence
(BLAST)

001: MSGIINFTNT SKQENCHRAM NPNISNSIGP DDGYSWRKYG QKTVKGSEFP RSYYKCTGQN CSVKKKVERS QNGEITKIIY NGEHNHQKSQ PIRRAITSSK
101: SYDLPEEKNG GSNMQFEDNK NVSALSLILN HANINMNLFE TTRESCSPLV SCEDEDEDED EDEVRAIEGI ISVDDNEFEQ RRRRDYCYPA EMNLSSRTTK
201: EPRVIVQIES EIDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSPSCPVRK QIERAPDDIK SVITTYEGKH NHEVPSINKT NGATVGNQTS PLISNDKSSI
301: LPFSESHKIS NIETQVQDFN FQLERKPFGY TRPNFVENQL SNLRCGPLYD LRLPSNLLSY NSFLFNSTQT SNSLPFNLQM PDFSLPNRIP PPDEFHFNDL
401: Q

Best Arabidopsis Sequence Match ( AT4G26440.1 )
(BLAST)

001: MAGIDNKAAV MGEWFDCSTT NHRKRSKAEL GREFSLNYIK NEDSLQTTFQ ESSRGALRER IAARSGFNAP WLNTEDILQS KSLTISSPGL SPATLLESPV
101: FLSNPLLSPT TGKLSSVPSD KAKAELFDDI TTSLAFQTIS GSGLDPTNIA LEPDDSQDYE ERQLGGLGDS MACCAPADDG YNWRKYGQKL VKGSEYPRSY
201: YKCTHPNCEA KKKVERSREG HIIEIIYTGD HIHSKPPPNR RSGIGSSGTG QDMQIDATEY EGFAGTNENI EWTSPVSAEL EYGSHSGSMQ VQNGTHQFGY
301: GDAAADALYR DENEDDRTSH MSVSLTYDGE VEESESKRRK LEAYATETSG STRASREPRV VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTAN
401: GCTVTKHVER ASDDFKSVLT TYIGKHTHVV PAARNSSHVG AGSSGTLQGS LATQTHNHNV HYPMPHSRSE GLATANSSLF DFQSHLRHPT GFSVYIGQSE
501: LSDLSMPGLT IGQEKLTSLQ APDIGDPTGL MLQLAAQPKV EPVSPQQGLD LSASSLICRE MLSRLRQI

Arabidopsis Description

WRKY34Probable WRKY transcription factor 34 [Source:UniProtKB/Swiss-Prot;Acc:O65590]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.