Factsheet for Solyc05g012770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072836	Potato	nucleus	97.44	97.44
VIT_01s0011g00220.t01	Wine grape	nucleus	66.54	67.33
CDY53941	Canola	nucleus	54.33	62.73
KRH70820	Soybean	nucleus, plastid	44.09	61.54
CDY36419	Canola	nucleus	53.74	60.0
CDX98138	Canola	nucleus	53.74	59.74
KRH74950	Soybean	nucleus	53.15	59.34
CDY33788	Canola	nucleus	51.38	59.05
Bra026554.1-P	Field mustard	nucleus	55.12	58.95
CDX96873	Canola	nucleus	52.95	57.73
Bra016716.1-P	Field mustard	nucleus	52.36	57.2
CDY62213	Canola	nucleus	52.17	57.11
CDY16122	Canola	nucleus	50.0	56.7
KRH50544	Soybean	nucleus	49.21	56.56
KRG89512	Soybean	nucleus	48.82	56.49
Bra026869.1-P	Field mustard	nucleus	53.35	56.46
Bra019697.1-P	Field mustard	nucleus	53.74	55.38
AT2G03340.1	Thale cress	nucleus	55.71	55.17
AT1G13960.1	Thale cress	nucleus	55.71	55.06
Bra024780.1-P	Field mustard	nucleus	52.56	54.94
CDY45169	Canola	nucleus	52.36	54.73
CDY03003	Canola	nucleus	52.56	54.6
CDY37191	Canola	nucleus	50.79	53.09
Solyc02g088340.2.1	Tomato	nucleus	38.19	42.17
Solyc03g104810.2.1	Tomato	nucleus	38.78	40.53
Solyc04g056360.2.1	Tomato	nucleus	26.18	33.17
Solyc09g014990.2.1	Tomato	nucleus	34.25	32.89
Solyc06g066370.2.1	Tomato	nucleus	33.86	32.15
Bra030848.1-P	Field mustard	nucleus	12.2	30.54
Solyc05g055750.2.1	Tomato	nucleus	27.56	30.5
CDY72350	Canola	nucleus	8.66	30.34
Solyc10g084380.1.1	Tomato	nucleus	25.2	30.33
CDY62293	Canola	nucleus	11.61	29.06
Solyc07g047960.2.1	Tomato	nucleus	23.43	28.81
Solyc12g006170.1.1	Tomato	nucleus	22.44	27.47
CDY62292	Canola	nucleus	11.22	27.4
Solyc12g014610.1.1	Tomato	nucleus	31.1	25.86
Solyc07g065260.2.1	Tomato	nucleus	29.53	25.17
Solyc07g066220.2.1	Tomato	nucleus	35.04	24.09
Solyc07g005650.2.1	Tomato	nucleus	22.64	22.42
Solyc10g005680.1.1	Tomato	nucleus	27.95	20.2

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4BXZ9	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF84	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc05g012770.2	EnsemblPlants:Solyc05g012770.2.1
UniParc:UPI0002765AA8	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:5928753..5934454

Molecular Weight (calculated)

55398.9 Da

IEP (calculated)

7.879

GRAVY (calculated)

-0.855

Length

508 amino acids

Sequence
(BLAST)

001: MAENEGSSSS STSRGQLLRP TITLPPRSSM ESLFSGGSSG ISPGPMTLVS SFFSDNDPDS ECRSFSQLLA GAMTPPAGFT GVRPGFPPLP PPSTAAITQS
101: PTAFTVPPGL SPTSLFDGFF SPGQGPFGMS HQQVLAQLTS QASQAQSQMH IQPNYPSSAT AAALSMSQFQ SLPSNAAANR QIPPTLDPNI VKESSDVSLS
201: DQRSEPASFA VDKPADDGYN WRKYGQKQVK GSEYPRSYYK CTNPNCPVKK KVERSLDGQV TEIIYKGQHN HQPPQASKRS KESGNPNGNY NLQGPYELSS
301: EGLTGNYNKP KEGEPSYSLR MKDQESSQAN DQTSGSSDSE EVGNAETRVD GRDIDERESK RRAVEVHSTE AACSHRTVAE PRIIVQTTSE VDLLDDGYRW
401: RKYGQKVVKG NPYPRSYYKC TSQGCNVRKH VERAASDPKA VITTYEGKHN HDVPAARNSS HNTANNSMSQ LRPHNPVVDR PAAMRRADFQ SNEQQPIALL
501: RFKEEQSI

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.