Factsheet for Solyc09g014990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g049970.2.1
Solyc11g005720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	Solyc11g005720.1.1	AT3G18690.1	15990873
AT2G38470.1	Solyc11g005720.1.1	AT3G18690.1	18650934
AT2G38470.1	Solyc11g005720.1.1	AT3G18690.1	21203436
AT2G38470.1	Solyc05g049970.2.1	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030388	Potato	nucleus	71.27	92.4
Bra005104.1-P	Field mustard	nucleus	43.67	50.55
VIT_08s0058g00690.t01	Wine grape	nucleus	52.55	50.36
CDY07729	Canola	nucleus	44.23	49.47
Bra000064.1-P	Field mustard	nucleus	44.05	49.26
Bra017117.1-P	Field mustard	nucleus	43.1	49.24
CDX91470	Canola	nucleus, plastid	44.23	49.16
Solyc06g066370.2.1	Tomato	nucleus	49.72	49.16
CDY65564	Canola	nucleus, plastid	43.67	49.04
CDY69941	Canola	nucleus, plastid	44.05	48.85
CDY18383	Canola	nucleus, plastid	44.05	48.44
CDY14459	Canola	nucleus, plastid	44.61	48.16
AT2G38470.1	Thale cress	nucleus, plastid	45.37	46.24
CDY48650	Canola	nucleus, plastid	36.29	43.34
Solyc04g056360.2.1	Tomato	nucleus	26.65	35.16
Solyc05g012770.2.1	Tomato	nucleus	32.89	34.25
Solyc05g055750.2.1	Tomato	nucleus	27.6	31.81
Solyc02g088340.2.1	Tomato	nucleus	27.22	31.3
Solyc03g104810.2.1	Tomato	nucleus	28.17	30.66
Solyc12g014610.1.1	Tomato	nucleus	34.4	29.79
Solyc07g065260.2.1	Tomato	nucleus	33.46	29.7
Solyc07g047960.2.1	Tomato	nucleus	21.74	27.84
Solyc12g006170.1.1	Tomato	nucleus	21.74	27.71
Solyc10g084380.1.1	Tomato	nucleus	21.93	27.49
Solyc07g066220.2.1	Tomato	nucleus	38.37	27.47
Solyc07g005650.2.1	Tomato	nucleus	19.47	20.08
Solyc10g005680.1.1	Tomato	nucleus	26.65	20.06

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0006970	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009408	GO:GO:0009409	GO:GO:0009414
GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009987
GO:GO:0010120	GO:GO:0010200	GO:GO:0010508	GO:GO:0019748	GO:GO:0034605	GO:GO:0042742
GO:GO:0043565	GO:GO:0044212	GO:GO:0050832	GO:GO:0070370	InterPro:IPR003657	InterPro:IPR036576
UniProt:K4CRX3	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774
SUPFAM:SSF118290	EnsemblPlantsGene:Solyc09g014990.2	EnsemblPlants:Solyc09g014990.2.1	UniParc:UPI000276BB2A	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:7395473..7398361

Molecular Weight (calculated)

58676.9 Da

IEP (calculated)

7.933

GRAVY (calculated)

-0.957

Length

529 amino acids

Sequence
(BLAST)

001: MASSGGNMNT FMNSFNSFSS SQFMTSSFSD LLSDNNNNNN SNNDNKNWGF SEDRSKSFPM MNSSTSPASP SSYLAFPHSL SPSMLLDSPV LFNNSNTLSS
101: PTTGSFGNLN SKEGNSEFSF QSRPATSSSI FQSSAPRNSL EDLMTRQQQT TEFSTAKTGV KSEVAPIQSF SQENMSNNPA PVHYCQPSQY VREQKAEDGY
201: NWRKYGQKQV KGSENPRSYY KCTFPNCPTK KKVERNLDGH ITEIVYKGSH NHPKPQSTRR SSSQSIQNLA YSNLDVTNQP NAFLENGQRD SFAVTDNSSA
301: SFGDDDVDQG SPISKSGEND ENEPEAKRWK GDNENEVISS ASRTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTFT GCPVRKHVER
401: ASHDLRAVIT TYEGKHNHDV PAARGSGSYA MNKPPSGSNN NNSMPVVPRP TVLANHSNQG MNFNDTFFNT TQIQPPITLQ MLQSSGTSSY SGFGNSSGSY
501: MNQMQHTNNS KPISKEEPKD DLFFSSFLN

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.