Factsheet for Solyc06g066370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043204	Potato	nucleus	97.38	97.57
KRH17125	Soybean	nucleus	61.31	57.04
KRH72765	Soybean	nucleus	61.31	56.55
GSMUA_Achr3P09940_001	Banana	nucleus	38.5	56.28
VIT_06s0004g07500.t01	Wine grape	nucleus	63.18	56.05
KRG98195	Soybean	nucleus	54.95	54.24
KRH30155	Soybean	nucleus	54.95	53.65
GSMUA_Achr6P32720_001	Banana	nucleus	44.67	52.41
GSMUA_Achr11P...	Banana	nucleus	44.86	51.5
Solyc09g014990.2.1	Tomato	nucleus	49.16	49.72
KXG33637	Sorghum	nucleus	47.29	45.5
Zm00001d043025_P001	Maize	nucleus	47.1	45.41
Os01t0826400-01	Rice	extracellular	46.36	44.68
TraesCS3B01G379200.1	Wheat	nucleus	45.79	43.83
Zm00001d038451_P001	Maize	nucleus	45.61	43.81
TraesCS1A01G298600.1	Wheat	nucleus, plastid	41.12	43.56
TraesCS3D01G341100.1	Wheat	nucleus	45.61	43.49
TraesCS3A01G347500.1	Wheat	nucleus	45.42	43.24
HORVU1Hr1G070250.2	Barley	nucleus, plastid	41.31	43.16
TraesCS1B01G308200.1	Wheat	nucleus, plastid	40.93	43.03
TraesCS1D01G292700.1	Wheat	nucleus, plastid	40.75	43.0
Zm00001d012482_P001	Maize	nucleus	45.05	40.64
HORVU3Hr1G088200.4	Barley	nucleus, plastid	45.23	40.4
GSMUA_Achr8P01790_001	Banana	nucleus	42.62	40.0
Os05t0474800-01	Rice	nucleus	42.24	39.51
Solyc04g056360.2.1	Tomato	nucleus	28.04	37.41
OQU78174	Sorghum	nucleus	44.49	36.67
Solyc02g088340.2.1	Tomato	nucleus	29.16	33.91
Solyc05g012770.2.1	Tomato	nucleus	32.15	33.86
Solyc05g055750.2.1	Tomato	nucleus	28.04	32.68
Solyc12g014610.1.1	Tomato	nucleus	37.01	32.41
Solyc03g104810.2.1	Tomato	nucleus	29.16	32.1
Solyc07g065260.2.1	Tomato	nucleus	34.21	30.7
Solyc10g084380.1.1	Tomato	nucleus	23.55	29.86
Solyc12g006170.1.1	Tomato	nucleus	22.62	29.16
Solyc07g047960.2.1	Tomato	nucleus	22.24	28.81
Solyc07g066220.2.1	Tomato	nucleus	39.63	28.69
Solyc10g005680.1.1	Tomato	nucleus	27.66	21.05
Solyc07g005650.2.1	Tomato	nucleus	18.32	19.1

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4C7R3	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc06g066370.2
EnsemblPlants:Solyc06g066370.2.1	UniParc:UPI0000F52F23	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:41672211..41675202

Molecular Weight (calculated)

59627.9 Da

IEP (calculated)

7.353

GRAVY (calculated)

-1.062

Length

535 amino acids

Sequence
(BLAST)

001: MAASSFSFPT SSSSFMTTSF TDLLASDDYP TKGLADRIAE RTGSGVPKFK SLPPPSLPLS PPPFSPSSYF AIPPGLSPTE LLDSPVLLSS SNLLPSPTTG
101: SFPSRAFNWK SSSHQDVKQE DKNYSDFSFQ PQVGTAASSI SQSQTNHVPL GQQAWNCQEP TKQNDQNANG RSEFNTVQNF MQNNNDQNNS GNQYNQSIRE
201: QKRSDDGYNW RKYGQKQVKG SENPRSYYKC TYPNCPTKKK VERSLDGQIT EIVYKGNHNH PKPQSTRRSS SSTASSAFQS YNTQTNEIPD HQSYGSNGQM
301: DSVATPENSS ISFGDDDHEH TSQKSSRSRG DDLDEEEPDS KRWKRENESE GVSALGGSRT VREPRVVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY
401: YKCTSTGCPV RKHVERASQD IRSVITTYEG KHNHDVPAAR GSGNHSINRP MAPTIRPTVT SHQSNYQVPL QSIRPQQSEM GAPFTLEMLQ KPNNYGFSGY
501: ANSGDSYENQ VQDNNVFSRT KDEPRDDLFM ESLLC

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.