CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94589
EES13183
OQU81546

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	EES13183	AT3G18690.1	15990873
AT2G38470.1	OQU81546	AT3G18690.1	15990873
AT2G38470.1	EES13183	AT3G18690.1	18650934
AT2G38470.1	OQU81546	AT3G18690.1	18650934
AT2G38470.1	EES13183	AT3G18690.1	21203436
AT2G38470.1	OQU81546	AT3G18690.1	21203436
AT2G38470.1	EER94589	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038451_P001	Maize	nucleus	57.01	66.43
Os05t0474800-01	Rice	nucleus	55.16	62.59
HORVU1Hr1G070250.2	Barley	nucleus, plastid	48.69	61.72
TraesCS1D01G292700.1	Wheat	nucleus, plastid	48.07	61.54
TraesCS1A01G298600.1	Wheat	nucleus, plastid	47.61	61.19
TraesCS1B01G308200.1	Wheat	nucleus, plastid	47.77	60.9
KXG33637	Sorghum	nucleus	47.61	55.58
GSMUA_Achr3P09940_001	Banana	nucleus	28.35	50.27
PGSC0003DMT400043204	Potato	nucleus	37.13	45.13
Bra005104.1-P	Field mustard	nucleus	31.74	45.08
KRH17125	Soybean	nucleus	39.75	44.87
KRH72765	Soybean	nucleus	39.91	44.66
Solyc06g066370.2.1	Tomato	nucleus	36.67	44.49
CDY07729	Canola	nucleus	32.36	44.4
Bra017117.1-P	Field mustard	nucleus	31.43	44.06
Bra000064.1-P	Field mustard	nucleus	32.05	43.97
KRG98195	Soybean	nucleus	36.67	43.91
GSMUA_Achr6P32720_001	Banana	nucleus	30.82	43.86
KXG21728	Sorghum	nucleus	34.51	43.33
CDY65564	Canola	nucleus, plastid	31.43	43.31
CDX91470	Canola	nucleus, plastid	31.74	43.28
KRH30155	Soybean	nucleus	36.36	43.07
CDY14459	Canola	nucleus, plastid	32.51	43.06
CDY69941	Canola	nucleus, plastid	31.59	42.98
VIT_06s0004g07500.t01	Wine grape	nucleus	39.91	42.95
CDY18383	Canola	nucleus, plastid	31.74	42.83
AT2G38470.1	Thale cress	nucleus, plastid	32.67	40.85
CDY48650	Canola	nucleus, plastid	26.35	38.6
GSMUA_Achr8P01790_001	Banana	nucleus	30.82	35.09
EES16036	Sorghum	nucleus	23.11	30.24
EER93417	Sorghum	nucleus	19.57	29.95
KXG36569	Sorghum	nucleus	26.35	27.99
EER94675	Sorghum	nucleus	20.65	26.91
OQU80981	Sorghum	nucleus	24.5	23.21
KXG26525	Sorghum	nucleus	26.04	22.84
KXG35872	Sorghum	nucleus	20.34	22.64
EES14907	Sorghum	nucleus	18.49	21.09

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	UniProt:A0A1Z5R317	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:OQU78174
ProteinID:OQU78174	ProteinID:OQU78174.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF76
SMART:SM00774	EnsemblPlantsGene:SORBI_3009G171600	SUPFAM:SSF118290	UniParc:UPI000B8BA21E	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:52696414..52699630

Molecular Weight (calculated)

68549.2 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.581

Length

649 amino acids

Sequence
(BLAST)

001: MVKLSNVYIG RRRVGLDSRH HFTILYAVAR PAASRSIRLR LASLRQPPTT LLSSPAMTST PGSFGGTLAA NSGPVALSFP TTSFANFLGG GGSSASSSGA
101: ADNGGVGLSK FKAMTPPSLP LSSSHPPASP ASYLHAFSGI LDSPILLTPS LFPSPTTGAI PSEPFNWMGT SESLSGSVKT EQQQYTDFTF QTAASAPPAT
201: STSTMTGASH SASYLQSSVL MAPLGRVGDS YNGGELQQQQ QQPPWAYQEP CTQFEAPAAA QPDNSMLGNG GYGGAPGPAV SGCFREQSQS NRPSSDDGYN
301: WRKYGQKNMK GSENPRSYYK CSFPGCPTKK KVERSPDGQV TEIVYKGAHN HPKPQSTRRS ASSAPAPASH VLQSVGDAVP EHSFGALSGT PVATPENSSG
401: SFGGDDEING VSSRLAGNFA GADDLDDDEP DSKRWRKDGG DGDGGVSLSG NNRTVREPRV VVQTMSDIDV LDDGYRWRKY GQKVVKGNPN PRSYYKCTTA
501: GCPVRKHVER ACHDTRAVVT TYEGKHNHDV PPARGSSASL YHRAALAAHQ MPQQAGGGSC YQQQQQHGGL VRTADGFGFG ASGGLHGGAP MMQAAESGFA
601: LSGFGHPAGT AAYSYTSHQQ QQTTTTNEAM YYAKDEPRDD MFFEQPLLF

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.