CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034084_P001	Maize	nucleus	83.73	83.33
TraesCS5D01G406500.1	Wheat	nucleus	60.38	60.95
TraesCS5B01G401800.1	Wheat	nucleus	59.43	59.86
TraesCS5A01G396800.1	Wheat	nucleus	59.43	59.43
EES16036	Sorghum	nucleus	32.78	28.02
KXG21728	Sorghum	nucleus	30.9	25.34
EER94675	Sorghum	nucleus	29.01	24.7
KXG33637	Sorghum	nucleus	30.19	23.02
KXG36569	Sorghum	nucleus	28.54	19.8
OQU78174	Sorghum	nucleus	29.95	19.57
OQU80981	Sorghum	nucleus	30.66	18.98
KXG26525	Sorghum	nucleus	31.6	18.11
EES14907	Sorghum	nucleus	22.17	16.52
KXG35872	Sorghum	nucleus	20.99	15.27

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8085916	UniProt:C5X066	EnsemblPlants:EER93417	ProteinID:EER93417
ProteinID:EER93417.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF49
SMART:SM00774	EnsemblPlantsGene:SORBI_3001G083000	SUPFAM:SSF118290	unigene:Sbi.19945	UniParc:UPI0001A82D20	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002466419.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:6408709..6412370

Molecular Weight (calculated)

45197.4 Da

IEP (calculated)

7.249

GRAVY (calculated)

-0.777

Length

424 amino acids

Sequence
(BLAST)

001: MDDRRGRRDA MGQRPFASAA QGQERVFDGG GGGGGGGPGP AFGGEFDQGS SSLMALLGAG GAVSSQPPPP TWGVEEVTAA PAINLVPQSL FSMANYAPPP
101: PSYQQPTSFA PSPLGGRVDP YPPYLVADQP PQWPPPRPAA ADSSMPHSNF TVFFPRNPYD HDMQLRATAL FGGSSGLHAH ALPPPPPAIE QPAKDGYSWR
201: KYGQKQLKDA ESPRSYYKCT RDGCPVKKVV ERSFDGFIKE ITYKGRHNHP RPQERGLAGG GNDALAAAEE DVDGPSDDDD DDVDGAPGRA ADGVVAGQRV
301: VKKPKIILQT PSEVDLLDDG YRWRKYGQKV VKGNHRPRSY YKCIADKCNV RKQIERASTD PRCVLTTYTG RHNHDPPGQG NEAAAATVAA GGSSADPGPP
401: SRNTASGSGA FQENWGARQL KEEC

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.