CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89222
EER94589
EES13183
OQU81546

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30250.1	EER89222	AT2G43790.1	15990873
AT2G30250.1	EES13183	AT3G18690.1	15990873
AT2G30250.1	OQU81546	AT3G18690.1	15990873
AT2G30250.1	EER94589	AT4G01370.1	15990873

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010399_P001	Maize	nucleus	85.88	89.16
Zm00001d038023_P001	Maize	nucleus	82.59	87.32
Os05t0343400-01	Rice	nucleus	71.95	76.39
TraesCS1A01G070400.1	Wheat	nucleus	61.51	72.27
TraesCS1D01G072900.1	Wheat	nucleus	64.02	71.34
TraesCS1B01G088900.2	Wheat	nucleus	62.67	70.74
AT5G07100.1	Thale cress	nucleus	33.66	56.31
CDY05016	Canola	nucleus	33.46	54.23
Bra028707.1-P	Field mustard	nucleus	33.27	53.92
CDY14055	Canola	nucleus	32.3	52.35
CDY29685	Canola	nucleus	32.69	48.29
Bra021623.1-P	Field mustard	nucleus	32.5	48.0
CDX97834	Canola	nucleus	33.08	47.37
Bra018325.1-P	Field mustard	nucleus	33.66	46.65
CDY10720	Canola	nucleus	33.46	46.38
CDX84848	Canola	nucleus	33.08	45.24
CDY24017	Canola	nucleus	32.88	44.97
CDY02051	Canola	nucleus	23.79	44.4
AT2G30250.1	Thale cress	nucleus	33.66	44.27
Bra022786.1-P	Field mustard	nucleus	32.3	44.18
KXG33637	Sorghum	nucleus	45.65	42.45
KRH00362	Soybean	nucleus	39.07	37.34
KRH40825	Soybean	nucleus	38.88	37.02
KRH65526	Soybean	nucleus	35.98	36.69
KRH76058	Soybean	nucleus	35.98	36.69
OQU78174	Sorghum	nucleus	43.33	34.51
EES16036	Sorghum	nucleus	29.98	31.25
EER93417	Sorghum	nucleus	25.34	30.9
EER94675	Sorghum	nucleus	29.21	30.32
KXG36569	Sorghum	nucleus	34.04	28.81
OQU80981	Sorghum	nucleus	32.11	24.23
KXG35872	Sorghum	nucleus	26.89	23.84
KXG26525	Sorghum	nucleus	33.08	23.11
EES14907	Sorghum	nucleus	23.21	21.09

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	UniProt:A0A1B6P7P6	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KXG21728
ProteinID:KXG21728	ProteinID:KXG21728.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1
SMART:SM00774	EnsemblPlantsGene:SORBI_3009G100500	SUPFAM:SSF118290	UniParc:UPI0001C80572	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:39826393..39831148

Molecular Weight (calculated)

54065.3 Da

IEP (calculated)

7.922

GRAVY (calculated)

-0.615

Length

517 amino acids

Sequence
(BLAST)

001: MASSTGSLEH GGFTFTPPPF ITSFTELLSG TGDMLGGAGG ADQERSPRGL FHRGARGGVG VPKFKSAQPP SLPISSPPPM SPSSYFAIPA GLSPAELLDS
101: PVLLHSSSNI LASPTTGAIP AQRFDWKQAA DLIASQSHQQ DDTRAAAAAG GFNDFSFHTA TTSNAMPAQT TSFPSFKQEQ QQQVEAAATT NKQSAVVASS
201: NNKQGSSGGG NSSNTKLEDG YNWRKYGQKQ VKGSENPRSY YKCTYHSCSM KKKVERSLAD GRITQIVYKG AHNHPKPLST RRNSSSGGVV AAGEEQQAAA
301: NSLSAAAAAA GGCGPEHSGA TAENSSVTFG DDEAENASHR SDGDEPDAKR WKQEDGENEG SSGGAGGKPV REPRLVVQTL SDIDILDDGF RWRKYGQKVV
401: KGNPNPRSYY KCTTVGCPVR KHVERASHDT RAVITTYEGK HNHDVPVGRG AASRAAAAAA VAPTMGALMA AGGHQQQQQP YTLEMLSGGV GGGAAYGGGY
501: AAKDEPRDDL FVDSLLC

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.