CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00834
KRH06592
KRH40392
KRH43402
KRH48074
KRH50176
KRH53873
KRH59551
KRH64076
KRH71277

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30250.1	KRH50176	AT2G43790.1	15990873
AT2G30250.1	KRH71277	AT2G43790.1	15990873
AT2G30250.1	KRH43402	AT3G18690.1	15990873
AT2G30250.1	KRH53873	AT3G18690.1	15990873
AT2G30250.1	KRH59551	AT3G18690.1	15990873
AT2G30250.1	KRH64076	AT3G18690.1	15990873
AT2G30250.1	KRH00834	AT4G01370.1	15990873
AT2G30250.1	KRH06592	AT4G01370.1	15990873
AT2G30250.1	KRH40392	AT4G01370.1	15990873
AT2G30250.1	KRH48074	AT4G01370.1	15990873

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76058	Soybean	nucleus	91.52	91.52
KRH00362	Soybean	nucleus	62.52	58.6
KRH40825	Soybean	nucleus	61.74	57.64
AT5G07100.1	Thale cress	nucleus	30.37	49.84
CDY05016	Canola	nucleus	30.57	48.59
Bra028707.1-P	Field mustard	nucleus	30.37	48.28
CDY14055	Canola	nucleus	30.37	48.28
KRH17125	Soybean	nucleus	47.34	41.74
CDY29685	Canola	nucleus	28.8	41.71
Bra021623.1-P	Field mustard	nucleus	28.8	41.71
KRG98195	Soybean	nucleus	43.98	41.14
KRH72765	Soybean	nucleus	46.94	41.03
CDX97834	Canola	nucleus	29.19	41.0
CDY10720	Canola	nucleus	29.78	40.48
Bra018325.1-P	Field mustard	nucleus	29.78	40.48
CDY24017	Canola	nucleus	29.98	40.21
KRH30155	Soybean	nucleus	43.39	40.15
CDX84848	Canola	nucleus	29.78	39.95
Bra022786.1-P	Field mustard	nucleus	29.39	39.42
TraesCS1A01G070400.1	Wheat	nucleus	33.92	39.09
AT2G30250.1	Thale cress	nucleus	30.18	38.93
Os05t0343400-01	Rice	nucleus	37.08	38.6
KRH70820	Soybean	nucleus, plastid	27.02	37.64
CDY02051	Canola	nucleus	20.51	37.55
TraesCS1D01G072900.1	Wheat	nucleus	34.32	37.5
Zm00001d038023_P001	Maize	nucleus	35.9	37.22
TraesCS1B01G088900.2	Wheat	nucleus	33.33	36.9
Zm00001d010399_P001	Maize	nucleus	35.7	36.35
KXG21728	Sorghum	nucleus	36.69	35.98
KRH34225	Soybean	nucleus	13.61	35.94
KRH55277	Soybean	nucleus	14.99	35.85
KRG89512	Soybean	nucleus	27.02	31.21
KRH74950	Soybean	nucleus	27.81	30.99
KRH50544	Soybean	nucleus	26.63	30.54
KRH46302	Soybean	nucleus	33.92	29.81
KRG98564	Soybean	nucleus	33.53	29.46
KRH44949	Soybean	nucleus	29.78	28.87
KRH67621	Soybean	nucleus	25.25	28.57
KRH14276	Soybean	nucleus	32.94	28.55
KRH01236	Soybean	nucleus	29.19	28.46
KRH73864	Soybean	nucleus	32.94	28.4
KRG95903	Soybean	nucleus	26.23	28.24
KRH49522	Soybean	extracellular, plasma membrane	13.61	27.38
KRH62550	Soybean	nucleus	38.86	25.89
KRH56379	Soybean	nucleus	38.46	25.13
KRH03056	Soybean	nucleus	5.52	23.73
KRH74020	Soybean	nucleus	22.88	22.88
KRH34226	Soybean	nucleus	14.99	22.62
KRH14103	Soybean	nucleus	22.49	22.44
KRH26105	Soybean	nucleus	20.32	22.06
KRH40304	Soybean	nucleus	31.56	21.8
KRH00919	Soybean	nucleus	31.76	21.64
KRH54934	Soybean	nucleus	19.92	21.49
KRH34224	Soybean	nucleus	13.81	19.07
KRH72303	Soybean	nucleus	19.13	18.2
KRH03057	Soybean	nucleus	13.21	17.36

Protein Annotations

EntrezGene:102666898	MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	EMBL:ACUP02001365	EnsemblPlantsGene:GLYMA_03G042700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:K7KCS7	EnsemblPlants:KRH65526	ProteinID:KRH65526	ProteinID:KRH65526.1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00023BC84F
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:5405762..5409385

Molecular Weight (calculated)

55981.1 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.879

Length

507 amino acids

Sequence
(BLAST)

001: MSFSFTDLLS TNNNNSLNMD DDPFGLEFAN NFKSASLPLS PSSIYPSSYA EFPPGFVPTS QSLNSHHFFS SQIVPASYTT EQSSSMSYNM RNTSTEGQQG
101: NKEEERNYSD LSFLTKTNHV PLFQSSTTMF QVEPLKKQDT MISSEAAKQT DFSSERTETK PEYPSTQGFS AALASIKPEI QSNSAPGSVH FNSTYAPKSI
201: REQKRSEDGY NWRKYGEKQV KGSENPRSYY KCTHPSCPTK KKVERSLEGH ITEIVYKGSH NHPKPLGRKN GSQSIHQTSS SCTNSGISDQ SVGEEDLEQT
301: SQTSYSGGGD DDLGNEAKRW KGENENDGHS YSSAGSRTVK EPRVVVQTTS EIDILDDGYR WRKYGQKVVK GNPNPRSYYK CVAPGCPVRK HVERAAHDMK
401: AVITTYEGKH IHDVPLGRGN SSYSMNRTSL NNNTNTSTSN VTAPAPIRPS AVTNYSNSAS FTNSLHDTKP PTSASQEPFP MDVLLSPGSI GFAANDLFLQ
501: SFLSKNF

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.