Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64076 | Soybean | nucleus | 71.62 | 75.0 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 53.15 | 59.6 |
| KRH59551 | Soybean | plastid | 53.6 | 57.21 |
| Bra037569.1-P | Field mustard | nucleus | 43.24 | 44.24 |
| Bra001716.1-P | Field mustard | nucleus | 42.34 | 43.93 |
| CDX82333 | Canola | nucleus | 42.34 | 43.93 |
| CDX75979 | Canola | nucleus | 41.44 | 43.4 |
| CDY68488 | Canola | nucleus | 42.34 | 43.32 |
| AT3G18690.1 | Thale cress | nucleus | 43.24 | 43.24 |
| CDY71738 | Canola | nucleus | 41.89 | 42.86 |
| CDX99326 | Canola | nucleus | 40.99 | 42.52 |
| GSMUA_Achr10P... | Banana | nucleus | 39.19 | 42.44 |
| CDX92261 | Canola | nucleus | 40.99 | 42.33 |
| Bra022345.1-P | Field mustard | nucleus | 40.54 | 41.67 |
| Solyc11g005720.1.1 | Tomato | nucleus | 40.54 | 38.96 |
| PGSC0003DMT400073800 | Potato | nucleus | 39.64 | 38.43 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 39.64 | 37.77 |
| KRH15991 | Soybean | nucleus | 39.19 | 36.71 |
| KRH18125 | Soybean | nucleus | 39.64 | 36.67 |
| KRH53420 | Soybean | nucleus | 40.09 | 35.74 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 34.68 | 35.48 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 37.84 | 34.43 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 36.94 | 34.17 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 36.94 | 33.74 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 37.84 | 33.33 |
| KRH64520 | Soybean | nucleus, plastid | 35.14 | 32.5 |
| Os08t0102900-00 | Rice | nucleus | 29.73 | 31.88 |
| Zm00001d025374_P001 | Maize | plastid | 36.94 | 30.83 |
| TraesCS7D01G323700.1 | Wheat | peroxisome | 33.78 | 29.53 |
| Zm00001d016748_P001 | Maize | nucleus | 37.84 | 29.27 |
| TraesCS7A01G326900.1 | Wheat | peroxisome | 33.33 | 29.02 |
| Os02t0539500-01 | Rice | nucleus | 34.68 | 28.0 |
| TraesCS7B01G227600.1 | Wheat | peroxisome | 31.98 | 27.84 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 40.09 | 27.05 |
| TraesCS2B01G314600.1 | Wheat | plastid | 40.09 | 27.05 |
| Zm00001d003743_P001 | Maize | nucleus | 37.84 | 26.67 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 39.19 | 26.44 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 22.07 | 25.13 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 34.68 | 23.77 |
| EES13183 | Sorghum | nucleus, plastid | 31.98 | 22.54 |
| OQU81546 | Sorghum | nucleus | 35.14 | 22.16 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 33.33 | 17.79 |
Protein Annotations
| EMBL:ACUP02003487 | EnsemblPlants:KRH53873 | EnsemblPlantsGene:GLYMA_06G151400 | EntrezGene:100808289 | InterPro:VQ | PANTHER:PTHR33143 |
| PFAM:PF05678 | ProteinID:KRH53873 | ProteinID:KRH53873.1 | SEG:seg | UniParc:UPI000233A2D8 | UniProt:K7KV66 |
| MapMan:35.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:12349932..12350894
Molecular Weight (calculated)
24196.6 Da
IEP (calculated)
6.420
GRAVY (calculated)
-0.477
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPPEIPFGG APLPKKELQL QGPRPPPLKV SKESHKIKKP PPHPAHHHHN YPHAPPDQNL QQQREPVIIY SVSPKVIHVT PGDFMDVVQR LTGASIGEEP
101: PSGRGDVSPA ARLASIEKTS PSERERERVL HNIDDNIAWM LGEGVEVGQF PGILTPEPGT LPPIPAEVFS PVREAQTAAS YWNDFSPSYW SASSFLASPS
201: GFLSVTVASP QPSPNLFSLF DL
101: PSGRGDVSPA ARLASIEKTS PSERERERVL HNIDDNIAWM LGEGVEVGQF PGILTPEPGT LPPIPAEVFS PVREAQTAAS YWNDFSPSYW SASSFLASPS
201: GFLSVTVASP QPSPNLFSLF DL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.