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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000064.1-P
Bra000955.1-P
Bra005104.1-P
Bra017117.1-P
Bra018325.1-P
Bra021623.1-P
Bra022786.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G18690.1 Bra018325.1-P AT2G30250.1 15990873
AT3G18690.1 Bra021623.1-P AT2G30250.1 15990873
AT3G18690.1 Bra022786.1-P AT2G30250.1 15990873
AT3G18690.1 Bra018325.1-P AT2G30250.1 21203436
AT3G18690.1 Bra021623.1-P AT2G30250.1 21203436
AT3G18690.1 Bra022786.1-P AT2G30250.1 21203436
AT3G18690.1 Bra000064.1-P AT2G38470.1 15990873
AT3G18690.1 Bra005104.1-P AT2G38470.1 15990873
AT3G18690.1 Bra017117.1-P AT2G38470.1 15990873
AT3G18690.1 Bra000955.1-P AT4G01370.1 15990873
AT3G18690.1 Bra000955.1-P AT4G01370.1 21203436
AT3G18690.1 Bra000955.1-P AT4G01370.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX82333 Canola nucleus 100.0 100.0
Bra037569.1-P Field mustard nucleus 71.5 70.51
Bra022345.1-P Field mustard nucleus 71.03 70.37
AT3G18690.1 Thale cress nucleus 67.29 64.86
KRH64076 Soybean nucleus 43.46 43.87
KRH43402 Soybean cytosol, mitochondrion, nucleus, plastid 40.19 43.43
KRH53873 Soybean nucleus 43.93 42.34
KRH59551 Soybean plastid 41.12 42.31
GSMUA_Achr10P... Banana nucleus 37.85 39.51
PGSC0003DMT400073800 Potato nucleus 38.32 35.81
Solyc11g005720.1.1 Tomato nucleus 38.32 35.5
GSMUA_Achr7P03200_001 Banana nucleus 35.05 34.56
GSMUA_Achr6P13020_001 Banana nucleus 37.38 34.33
Bra025892.1-P Field mustard nucleus 35.51 33.04
HORVU5Hr1G007670.2 Barley nucleus 36.45 32.5
TraesCS5A01G027100.1 Wheat nucleus 37.85 32.14
TraesCS5D01G034800.1 Wheat nucleus 36.45 31.97
TraesCS5B01G026300.1 Wheat nucleus 35.98 31.69
TraesCS7D01G323700.1 Wheat peroxisome 35.98 30.32
TraesCS7A01G326900.1 Wheat peroxisome 35.05 29.41
Os08t0102900-00 Rice nucleus 28.04 28.99
TraesCS7B01G227600.1 Wheat peroxisome 34.11 28.63
Zm00001d025374_P001 Maize plastid 34.58 27.82
Zm00001d016748_P001 Maize nucleus 35.98 26.83
Os02t0539500-01 Rice nucleus 33.64 26.18
Bra012276.1-P Field mustard plastid 21.5 25.7
Zm00001d003743_P001 Maize nucleus 37.38 25.4
TraesCS2D01G296200.1 Wheat mitochondrion 38.32 24.92
TraesCS2B01G314600.1 Wheat plastid 37.85 24.62
TraesCS2A01G298100.1 Wheat mitochondrion 37.85 24.62
Zm00001d034979_P001 Maize nucleus, plastid 35.05 23.15
HORVU0Hr1G004060.1 Barley cytosol, plastid 20.09 22.05
EES13183 Sorghum nucleus, plastid 31.31 21.27
OQU81546 Sorghum nucleus 34.58 21.02
Os04t0417600-00 Rice cytosol, mitochondrion, nucleus 30.37 15.62
Protein Annotations
EnsemblPlants:Bra001716.1EnsemblPlants:Bra001716.1-PEnsemblPlantsGene:Bra001716InterPro:VQPANTHER:PTHR33143PANTHER:PTHR33143:SF26
PFAM:PF05678SEG:segUniParc:UPI0002540481UniProt:M4CBY6MapMan:35.1:
Description
AT3G18690 (E=2e-084) MKS1 | MKS1 (MAP kinase substrate 1); protein binding
Coordinates
chrA03:-:18017655..18018299
Molecular Weight (calculated)
22949.2 Da
IEP (calculated)
6.724
GRAVY (calculated)
-0.368
Length
214 amino acids
Sequence
(BLAST)
001: MDPWEHFAGG NPSDQQTPKR QLQICGPRPS PLSVNKDSHK IKKPPRHPAP PPQHHRDQAQ PYAPREPVVI YAVSPKVVHT TTSDFMNVVQ RLTGISSEVF
101: LESRNDGDVS PAARLAATEN ASPRGGKEPV EISTAMEEAA ELSGYAPGIL SPSPAMLPTV PAGIFSPMFH LGGLFSPALP PGLFSPAGLM SPGYASLAAS
201: PTFADFFSHI WDRE
Best Arabidopsis Sequence Match ( AT3G18690.1 )
(BLAST)
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.