Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 2
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G034800.1 | Wheat | nucleus | 80.25 | 79.92 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 77.78 | 75.0 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 71.19 | 72.08 |
| Os02t0539500-01 | Rice | nucleus | 56.38 | 49.82 |
| Zm00001d016748_P001 | Maize | nucleus | 56.79 | 48.08 |
| GSMUA_Achr10P... | Banana | nucleus | 36.63 | 43.41 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 32.1 | 39.39 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 36.21 | 37.77 |
| CDX92261 | Canola | nucleus | 33.33 | 37.67 |
| KRH59551 | Soybean | plastid | 32.1 | 37.5 |
| Bra022345.1-P | Field mustard | nucleus | 33.33 | 37.5 |
| KRH53873 | Soybean | nucleus | 33.74 | 36.94 |
| CDX99326 | Canola | nucleus | 32.51 | 36.92 |
| Bra037569.1-P | Field mustard | nucleus | 32.92 | 36.87 |
| CDX75979 | Canola | nucleus | 31.69 | 36.32 |
| CDX82333 | Canola | nucleus | 31.69 | 35.98 |
| Bra001716.1-P | Field mustard | nucleus | 31.69 | 35.98 |
| KRH64076 | Soybean | nucleus | 31.28 | 35.85 |
| CDY68488 | Canola | nucleus | 31.69 | 35.48 |
| AT3G18690.1 | Thale cress | nucleus | 32.1 | 35.14 |
| CDY71738 | Canola | nucleus | 30.86 | 34.56 |
| TraesCS2B01G314600.1 | Wheat | plastid | 46.5 | 34.35 |
| Solyc11g005720.1.1 | Tomato | nucleus | 30.04 | 31.6 |
| PGSC0003DMT400073800 | Potato | nucleus | 29.63 | 31.44 |
| TraesCS7B01G227600.1 | Wheat | peroxisome | 29.63 | 28.24 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G026300.1 | EnsemblPlantsGene:TraesCS5B01G026300 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF1 | PFAM:PF05678 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:25061684..25062761
Molecular Weight (calculated)
25552.3 Da
IEP (calculated)
9.904
GRAVY (calculated)
-0.310
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MDASSSEDRQ SPRSRQLQLQ GPRPPRLSVS KDSHKIRKPP VVPLPYGARQ QAPNNRHPQA QPQQPRAPVI IYDASPKVIH TQPGEFLALV QRLTGPGAPA
101: QSSTEAAAGP SAVPPQFQPQ ESPFSPAARY AAIERSVRPL PPGPAPYAAG SWLDLDGFAE VLGPGRPGIL SPVPSALPAA ASAGLFSPLP FDTSSLSWLN
201: DLSPFLASAG ARDASSPGGL LLATPTMPSP GMIVRFFTDF PDL
101: QSSTEAAAGP SAVPPQFQPQ ESPFSPAARY AAIERSVRPL PPGPAPYAAG SWLDLDGFAE VLGPGRPGIL SPVPSALPAA ASAGLFSPLP FDTSSLSWLN
201: DLSPFLASAG ARDASSPGGL LLATPTMPSP GMIVRFFTDF PDL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.