Factsheet for TraesCS3B01G379200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G184500.1
TraesCS1B01G192600.3
TraesCS1D01G192200.1
TraesCS2A01G298100.1
TraesCS2B01G314600.1
TraesCS2D01G296200.1
TraesCS5A01G027100.1
TraesCS5B01G026300.1
TraesCS5D01G034800.1
TraesCS7A01G326900.1
TraesCS7B01G227600.1
TraesCS7D01G323700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	TraesCS2A01G298100.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS2B01G314600.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS2D01G296200.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS5A01G027100.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS5B01G026300.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS5D01G034800.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS7A01G326900.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS7B01G227600.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS7D01G323700.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS2A01G298100.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS2B01G314600.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS2D01G296200.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS5A01G027100.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS5B01G026300.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS5D01G034800.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS7A01G326900.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS7B01G227600.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS7D01G323700.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS2A01G298100.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS2B01G314600.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS2D01G296200.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS5A01G027100.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS5B01G026300.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS5D01G034800.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS7A01G326900.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS7B01G227600.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS7D01G323700.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS1A01G184500.1	AT4G01370.1	18650934
AT2G38470.1	TraesCS1B01G192600.3	AT4G01370.1	18650934
AT2G38470.1	TraesCS1D01G192200.1	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G347500.1	Wheat	nucleus	96.78	96.26
TraesCS3D01G341100.1	Wheat	nucleus	96.06	95.72
HORVU3Hr1G088200.4	Barley	nucleus, plastid	91.59	85.48
Os01t0826400-01	Rice	extracellular	74.6	75.14
Zm00001d043025_P001	Maize	nucleus	72.09	72.61
KXG33637	Sorghum	nucleus	71.56	71.94
Zm00001d012482_P001	Maize	nucleus	69.05	65.09
TraesCS1B01G308200.1	Wheat	nucleus, plastid	51.7	56.78
GSMUA_Achr3P09940_001	Banana	nucleus	33.99	51.91
KRH72765	Soybean	nucleus	50.45	48.62
GSMUA_Achr6P32720_001	Banana	nucleus	39.18	48.03
KRH17125	Soybean	nucleus	49.37	48.0
Bra005104.1-P	Field mustard	nucleus	39.0	47.7
VIT_06s0004g07500.t01	Wine grape	nucleus	50.27	46.6
CDY65564	Canola	nucleus, plastid	39.18	46.5
CDX91470	Canola	nucleus, plastid	39.36	46.22
PGSC0003DMT400043204	Potato	nucleus	44.01	46.07
TraesCS1B01G088900.2	Wheat	nucleus	37.57	45.85
Solyc06g066370.2.1	Tomato	nucleus	43.83	45.79
Bra017117.1-P	Field mustard	nucleus	37.92	45.79
KRG98195	Soybean	nucleus	44.36	45.76
Bra000064.1-P	Field mustard	nucleus	38.64	45.67
CDY07729	Canola	nucleus	38.46	45.45
CDY69941	Canola	nucleus, plastid	38.46	45.07
KRH30155	Soybean	nucleus	44.19	45.07
CDY18383	Canola	nucleus, plastid	38.46	44.7
CDY14459	Canola	nucleus, plastid	39.18	44.69
AT2G38470.1	Thale cress	nucleus, plastid	39.89	42.97
CDY48650	Canola	nucleus, plastid	31.84	40.18
GSMUA_Achr8P01790_001	Banana	nucleus	40.61	39.82
TraesCS5B01G108500.1	Wheat	nucleus	28.98	32.73
TraesCS5B01G401800.1	Wheat	nucleus	24.15	32.07
TraesCS4B01G165900.2	Wheat	nucleus	25.76	29.57
TraesCS5B01G257300.1	Wheat	nucleus	34.17	28.13
TraesCS2B01G209200.1	Wheat	nucleus	23.43	27.99
TraesCS2B01G217400.2	Wheat	nucleus	29.34	26.71
TraesCS7B01G136400.2	Wheat	nucleus, plastid	29.87	26.38
TraesCS2B01G351600.1	Wheat	nucleus	33.27	25.48
TraesCS7B01G185400.2	Wheat	nucleus	22.36	23.95

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF76	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS3B01G379200
EnsemblPlants:TraesCS3B01G379200.1	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:+:597087924..597090275

Molecular Weight (calculated)

59596.9 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.808

Length

559 amino acids

Sequence
(BLAST)

001: MTTSSSGSVE TSANSRPGSF SFGSASFTEM LGGSAAAGGA SGYKALTPPS LPLSPSLMSP SSFFSMPAGM NLADFLDSPV LLTSSIFPSP TTGAFGSQFN
101: WRPEAPTPSA AEQGGKEEQR QPYSDFSFQT APANSEEAAR ATMTTSLQPP VAVASQGEEA YTGQQQQAWG YGQQQEGMNA SAANPASFSA PALQATSSEM
201: APAGAYRQTH SQRRSSDDGY NWRKYGQKQV KGSENPRSYY KCTFPNCPTK KKVETSLEGQ ITEIVYKGTH NHAKPLNTRR GSGGGAAAAQ VLQIGGDASE
301: NSFGGMVTTP ENSSASFGDD DNGVSSPRSG NVGRNDNDDD EPDSKRRRDS GDGEGINMAG NRTVREPRVV VQTMSDIDIL DDGYRWRKYG QKVVKGNPNP
401: RSYYKCTTVG CPVRKHVERA SHDLRAVITT YEGKHNHDVP AARGSAALYR PAPRAADSTA STGHYLNPQP SAMAYQASAA PNVAGTQQYA PRPDGFGGQN
501: PGSFGFNGNF GFSGAGFDNP TASYMSQHQE QQRQNDAMHA SSAKEEPREE DMFFQNSQY

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.