Factsheet for TraesCS7B01G136400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G106400.1
TraesCS4B01G197800.1
TraesCS4D01G198600.1
TraesCS7A01G111300.1
TraesCS7B01G009200.1
TraesCS7D01G106400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	TraesCS7A01G111300.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS7B01G009200.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS7D01G106400.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS4A01G106400.1	AT3G45640.1	24830428
AT4G26440.1	TraesCS4B01G197800.1	AT3G45640.1	24830428
AT4G26440.1	TraesCS4D01G198600.1	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G239800.2	Wheat	nucleus	92.58	93.31
TraesCS7A01G240800.1	Wheat	nucleus	90.21	87.71
HORVU7Hr1G049130.1	Barley	nucleus, plastid	31.75	82.04
Os08t0499300-01	Rice	nucleus	56.4	52.97
OQU80981	Sorghum	nucleus	54.19	50.07
TraesCS5B01G257300.1	Wheat	nucleus	49.13	45.8
Zm00001d052847_P001	Maize	nucleus	51.5	44.72
GSMUA_Achr5P23900_001	Banana	nucleus	35.23	39.47
Bra028939.1-P	Field mustard	nucleus	27.01	38.08
GSMUA_Achr6P03500_001	Banana	nucleus	30.81	37.86
GSMUA_Achr5P04150_001	Banana	nucleus	37.44	37.44
CDY11947	Canola	nucleus	33.65	37.11
GSMUA_Achr11P...	Banana	nucleus	37.91	37.09
GSMUA_Achr4P01600_001	Banana	nucleus	39.02	37.09
CDY36788	Canola	nucleus	35.39	35.9
TraesCS1B01G088900.2	Wheat	nucleus	25.75	35.59
Bra002828.1-P	Field mustard	nucleus	37.28	35.07
CDY49388	Canola	nucleus	37.12	35.02
CDX94335	Canola	nucleus	27.96	34.44
CDX89336	Canola	nucleus	28.91	34.27
Bra026438.1-P	Field mustard	nucleus	28.75	34.08
AT5G56270.1	Thale cress	nucleus	36.81	33.92
TraesCS2B01G351600.1	Wheat	nucleus	38.7	33.56
CDY69527	Canola	nucleus	28.28	32.97
CDY32799	Canola	nucleus	31.12	32.78
Bra019105.1-P	Field mustard	nucleus	26.86	32.14
CDY42736	Canola	nucleus	26.86	32.14
AT4G26440.1	Thale cress	nucleus	28.44	31.69
TraesCS5B01G108500.1	Wheat	nucleus	24.17	30.91
TraesCS5B01G401800.1	Wheat	nucleus	20.06	30.17
TraesCS3B01G379200.1	Wheat	nucleus	26.38	29.87
TraesCS4B01G165900.2	Wheat	nucleus	22.27	28.95
TraesCS1B01G308200.1	Wheat	nucleus, plastid	22.43	27.9
VIT_19s0015g01870.t01	Wine grape	nucleus	32.23	27.35
TraesCS2B01G217400.2	Wheat	nucleus	26.22	27.04
KRH62550	Soybean	nucleus	31.91	26.54
TraesCS2B01G209200.1	Wheat	nucleus	19.59	26.5
KRH56379	Soybean	nucleus	31.75	25.9
PGSC0003DMT400029328	Potato	nucleus	25.59	23.24
TraesCS7B01G185400.2	Wheat	nucleus	18.8	22.8
Solyc10g005680.1.1	Tomato	nucleus	24.17	21.76

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS7B01G136400	EnsemblPlants:TraesCS7B01G136400.2
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7B:-:168321493..168324714

Molecular Weight (calculated)

68387.9 Da

IEP (calculated)

7.691

GRAVY (calculated)

-0.658

Length

633 amino acids

Sequence
(BLAST)

001: MYASLSLSAT VMAGASNRRG AVMEDWMLST PSPRTLMLSL FNDDFSSGPF SDVSSDSGSN KPHDGMERSK ASVGSSPGES SQVTKTSLHF EPNLFDANEK
101: SSPDSGSPAE RNGFCALKID TSRVGFSSSI RSPIIIPPGV SPRELLESPV FLPNAIAQPS PTTGKLPFLM CTNAKTTIPS VHKKAQELSH DDHTISFQQI
201: LRSKPTFSIA DKVICSKDPG VTHQNQASAS ENNHRIPDNE QEDSKANRNG EDCPAMVIVR AEDGYNWRKY GKKQVKYSDH PTSYYKCSHQ NCPVKKKVER
301: CQDGDITEIV YKGSHNHPLP PPDRWPGVPF SHSNNLQADG EDSARDDHFQ HAHGEVPATN LSASLNREGF EDRSATREAI DVSPPTLTGE DNNREAHGTV
401: SSGIDRDKDA TELKRRMMDY VTPTTAIGSI DIGALASRAV REARVIVQTT SEVDVLDDGY RWRKYGQKVV KGNPNPRSYY KCTHPGCPVR KHVERASNDL
501: KSVITTYEGK HTHEVPADRN NGHPSSGHGG VAPPPAQGGI IPQYSGAAAY GSLAQLGVAG GFPFGVLPRG LALVPVPAQM MAGHPSAMQG NPRLVLQARE
601: VKGNPAARPA DQSGTGPAAY QQLMSRLSQG PNM

Best Arabidopsis Sequence Match ( AT2G03340.1 )
(BLAST)

001: MAEKEEKEPS KLKSSTGVSR PTISLPPRPF GEMFFSGGVG FSPGPMTLVS NLFSDPDEFK SFSQLLAGAM ASPAAAAVAA AAVVATAHHQ TPVSSVGDGG
101: GSGGDVDPRF KQSRPTGLMI TQPPGMFTVP PGLSPATLLD SPSFFGLFSP LQGTFGMTHQ QALAQVTAQA VQGNNVHMQQ SQQSEYPSST QQQQQQQQQA
201: SLTEIPSFSS APRSQIRASV QETSQGQRET SEISVFEHRS QPQNADKPAD DGYNWRKYGQ KQVKGSDFPR SYYKCTHPAC PVKKKVERSL DGQVTEIIYK
301: GQHNHELPQK RGNNNGSCKS SDIANQFQTS NSSLNKSKRD QETSQVTTTE QMSEASDSEE VGNAETSVGE RHEDEPDPKR RNTEVRVSEP VASSHRTVTE
401: PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TTPDCGVRKH VERAATDPKA VVTTYEGKHN HDVPAARTSS HQLRPNNQHN TSTVNFNHQQ
501: PVARLRLKEE QIT

Arabidopsis Description

WRKY3Putative WRKY DNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WPM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.