CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89222
KXG39626

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	EER89222	AT2G43790.1	24830428
AT4G26440.1	KXG39626	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052847_P001	Maize	nucleus	78.69	73.94
Os08t0499300-01	Rice	nucleus	60.29	61.28
TraesCS7D01G239800.2	Wheat	nucleus	50.8	55.41
TraesCS7B01G136400.2	Wheat	nucleus, plastid	50.07	54.19
TraesCS7A01G240800.1	Wheat	nucleus	50.95	53.61
KXG35872	Sorghum	nucleus	44.23	51.97
HORVU7Hr1G049130.1	Barley	nucleus, plastid	18.54	51.84
GSMUA_Achr5P23900_001	Banana	nucleus	36.35	44.07
GSMUA_Achr4P01600_001	Banana	nucleus	41.31	42.49
GSMUA_Achr6P03500_001	Banana	nucleus	31.53	41.94
GSMUA_Achr5P04150_001	Banana	nucleus	38.25	41.39
Bra028939.1-P	Field mustard	nucleus	26.57	40.53
GSMUA_Achr11P...	Banana	nucleus	37.37	39.57
CDY11947	Canola	nucleus	32.99	39.37
CDY36788	Canola	nucleus	35.04	38.46
Bra002828.1-P	Field mustard	nucleus	37.08	37.74
CDY49388	Canola	nucleus	36.79	37.56
CDX94335	Canola	nucleus	28.03	37.35
AT5G56270.1	Thale cress	nucleus	37.23	37.12
Bra026438.1-P	Field mustard	nucleus	28.91	37.08
CDX89336	Canola	nucleus	28.76	36.89
CDY42736	Canola	nucleus	28.03	36.29
Bra019105.1-P	Field mustard	nucleus	28.03	36.29
CDY69527	Canola	nucleus	28.47	35.91
CDY32799	Canola	nucleus	30.8	35.11
AT4G26440.1	Thale cress	nucleus	29.05	35.04
KXG26525	Sorghum	nucleus	37.08	34.32
KXG21728	Sorghum	nucleus	24.23	32.11
EES16036	Sorghum	nucleus	23.07	31.85
VIT_19s0015g01870.t01	Wine grape	nucleus	33.87	31.1
KXG33637	Sorghum	nucleus	25.11	30.94
EER93417	Sorghum	nucleus	18.98	30.66
EER94675	Sorghum	nucleus	21.9	30.12
KRH62550	Soybean	nucleus	32.7	29.43
KXG36569	Sorghum	nucleus	25.69	28.81
KRH56379	Soybean	nucleus	32.41	28.61
PGSC0003DMT400029328	Potato	nucleus	26.57	26.11
Solyc10g005680.1.1	Tomato	nucleus	25.55	24.89
OQU78174	Sorghum	nucleus	23.21	24.5
EES14907	Sorghum	nucleus	16.64	20.04

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1Z5RBX4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:OQU80981	ProteinID:OQU80981
ProteinID:OQU80981.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774
EnsemblPlantsGene:SORBI_3007G217700	SUPFAM:SSF118290	UniParc:UPI000B424FE8	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:64590499..64600679

Molecular Weight (calculated)

74528.9 Da

IEP (calculated)

6.888

GRAVY (calculated)

-0.728

Length

685 amino acids

Sequence
(BLAST)

001: MEDWMLPSPS PRTLMPSFFN EEFSSAPFSN IFSDDRSNKP LDEIEKSKTF IGSSAQETSQ DTKDHPQTES NLFSANQKST SPGGLAERMA ARAGFGVLKI
101: DTSRVSSSGA PIRSPVTIPP GVSPRELLES PVFLPNATSQ PSPTTGKLPF LMPNNFKSTM PSVPEKSEDH SHEDSAFSFQ PILRSKPSTL WTAEKGSSVV
201: HQTQSLTKDS QGLNVHANPT ATKHETEENL VKPKTCDSMF DEQSEEIQNG EDSSAPDTGT ADDGYFLRVN RRGMPLLDDG YNWRKYGEKQ VKKSEHPRSY
301: YKCTHPKCPV KKMVERSLEG HITEIVYRGS HSHPLPLPNS RPSVPLSHFN DSEADGNFSS KPGPGYDSST SQGIAPKGQF QDVHSGALET KLSGSLTTTE
401: IADTSVMESM DVSSTLSSNE KGDRAMNGAV PSTNDMNEDE TESKRRKMEV SVASNTANIV TDMAAMASRT AREPRIVVQT TSEVDILDDG YRWRKYGQKV
501: VKGNPNPRSY YKCTYAGCSV RKHVERASND LKSVITTYEG RHNHEVPAAR NSNGHPSYGS SAAPQGSSLH RRPEPPQFSM PHAAAAAAYG SLCLPPQLNA
601: ASGGFSFGML PPAMAMAIPV PSLGNFMPAQ MPGHGSPMQG CSGLMLPRGE EKVNPEQQSR LPVANGNAAA TYQQLMGRWP QGHQM

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.