CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021947_P002	Maize	nucleus	94.44	94.13
Zm00001d006702_P001	Maize	nucleus	93.29	93.44
Os07t0583700-01	Rice	nucleus	81.18	80.26
GSMUA_Achr4P13970_001	Banana	nucleus	46.32	55.17
GSMUA_Achr3P29850_001	Banana	nucleus	48.61	51.56
GSMUA_Achr7P25840_001	Banana	nucleus	20.62	51.01
VIT_19s0090g01720.t01	Wine grape	nucleus	43.7	45.25
KRG98564	Soybean	nucleus	42.06	44.54
CDY70490	Canola	nucleus	37.64	44.4
KRH46302	Soybean	nucleus	41.9	44.37
KRH14276	Soybean	nucleus	41.9	43.76
Bra028971.1-P	Field mustard	nucleus	34.7	43.71
KRH73864	Soybean	nucleus	41.73	43.37
AT4G26640.2	Thale cress	nucleus	38.63	42.37
CDX92808	Canola	nucleus	36.33	42.37
CDX97359	Canola	nucleus	36.99	42.09
Bra010431.1-P	Field mustard	nucleus	37.32	41.83
CDX89317	Canola	nucleus	36.5	41.76
CDY14304	Canola	nucleus	37.32	41.68
CDX94303	Canola	nucleus	36.17	41.54
Bra026414.1-P	Field mustard	nucleus	36.33	41.5
VIT_00s0463g00010.t01	Wine grape	nucleus	41.08	41.01
CDY46692	Canola	nucleus	35.19	40.95
Solyc12g014610.1.1	Tomato	nucleus	40.92	40.92
PGSC0003DMT400076670	Potato	nucleus	40.75	40.75
PGSC0003DMT400057409	Potato	nucleus	38.63	39.6
Solyc07g065260.2.1	Tomato	nucleus	38.3	39.26
TraesCS2B01G217400.2	Wheat	nucleus	37.81	37.62
TraesCS2A01G189700.1	Wheat	nucleus	37.64	37.58
HORVU2Hr1G036320.1	Barley	nucleus	37.32	37.07
TraesCS2D01G198100.4	Wheat	nucleus	37.64	36.05
KRH49522	Soybean	extracellular, plasma membrane	14.24	34.52
KXG21728	Sorghum	nucleus	28.81	34.04
VIT_12s0057g00550.t01	Wine grape	nucleus	22.42	33.99
KXG33637	Sorghum	nucleus	28.31	31.12
EES16036	Sorghum	nucleus	25.2	31.05
CDX93073	Canola	nucleus	18.33	30.43
Solyc12g006170.1.1	Tomato	nucleus	20.29	29.88
Solyc07g047960.2.1	Tomato	nucleus	20.13	29.78
Bra019095.1-P	Field mustard	nucleus	35.84	29.05
PGSC0003DMT400015754	Potato	nucleus	19.8	28.67
EER93417	Sorghum	nucleus	19.8	28.54
EER94675	Sorghum	nucleus	22.09	27.11
CDY50038	Canola	nucleus	18.99	26.61
OQU78174	Sorghum	nucleus	27.99	26.35
Bra013187.1-P	Field mustard	nucleus	19.15	26.17
OQU80981	Sorghum	nucleus	28.81	25.69
KRH74020	Soybean	nucleus	21.28	25.64
KRH14103	Soybean	nucleus	21.28	25.59
KXG26525	Sorghum	nucleus	30.93	25.54
AT2G04880.1	Thale cress	nucleus	18.99	23.82
PGSC0003DMT400074158	Potato	nucleus	21.28	23.68
KXG35872	Sorghum	nucleus	22.26	23.33
EES14907	Sorghum	nucleus	17.84	19.16

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1B6QF72	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009961	GO:GO:0009987	GO:GO:0043565
GO:GO:0045893	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KXG36569	ProteinID:KXG36569	ProteinID:KXG36569.1
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	EnsemblPlantsGene:SORBI_3002G355000
SUPFAM:SSF118290	UniParc:UPI00081ABF8A	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:71806701..71813179

Molecular Weight (calculated)

65568.2 Da

IEP (calculated)

6.708

GRAVY (calculated)

-0.743

Length

611 amino acids

Sequence
(BLAST)

001: MADSPNPSSG DLPAGAGGST EKPVLADRRV AALAGAGARY KAMSPARLPI SREPCLTIPA GFSPGALLES PVLLNNFKVE PSPTTGTLSM AAIINKSTHR
101: DILPSPRDNS AGSGQEDGGS RDFEFKPHLN SQLAAPAVNN QNRHDTPMQN HSSNHASPSS NLMTENKPLC SRESSHTANV SSAPNQPVSI VCPSDNMPAE
201: VGTSEMHQIN SSENAAQEAQ TENVAEKSAE DGYNWRKYGQ KHVKGSENPR SYYKCTHPNC EVKKLLERSL DGQITEVVYK GRHNHPKPQP NRRLAAGAVP
301: SSQGEERYDG VAPIEDKPSN IYSNLCNQVH SAGMIDTVPG PASDDDVDAG GGRPYPGDDA NDDDDLDSKR RKMESAGIDA ALMGKPNREP RVVVQTVSEV
401: DILDDGYRWR KYGQKVVKGN PNPRSYYKCT HTGCPVRKHV ERASHDPKSV ITTYEGKHNH EVPASRNASH EMSTAPMKPV VHPINSNMPG LGGMMRACDA
501: RAFTNQYSQA AESDTISLDL GVGISPNHSD ATNQMQPSVP EPMQYQMQHM APVYGSMGLP GMPVAAVPGN AASSIYGSRD EKGNEGFTFK ATPLDRSANF
601: YSSAGNLVMG P

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.