Factsheet for Bra026414.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89317	Canola	nucleus	97.57	97.75
CDX94303	Canola	nucleus	95.89	96.43
Bra010431.1-P	Field mustard	nucleus	82.24	80.73
AT4G26640.2	Thale cress	nucleus	83.18	79.89
Bra028971.1-P	Field mustard	nucleus	57.76	63.71
Bra019095.1-P	Field mustard	nucleus	78.32	55.57
VIT_19s0090g01720.t01	Wine grape	nucleus	54.58	49.49
Solyc12g014610.1.1	Tomato	nucleus	51.03	44.68
PGSC0003DMT400076670	Potato	nucleus	51.03	44.68
GSMUA_Achr7P25840_001	Banana	nucleus	20.37	44.13
Solyc07g065260.2.1	Tomato	nucleus	48.97	43.96
PGSC0003DMT400057409	Potato	nucleus	48.6	43.62
GSMUA_Achr4P13970_001	Banana	nucleus	41.31	43.08
Bra028707.1-P	Field mustard	nucleus	25.05	42.01
GSMUA_Achr3P29850_001	Banana	nucleus	41.87	38.89
KRH49522	Soybean	extracellular, plasma membrane	18.32	38.89
Bra021623.1-P	Field mustard	nucleus	24.3	37.14
Os07t0583700-01	Rice	nucleus	42.43	36.73
Zm00001d021947_P002	Maize	nucleus	41.87	36.54
KXG36569	Sorghum	nucleus	41.5	36.33
Bra018325.1-P	Field mustard	nucleus	25.23	36.19
Zm00001d006702_P001	Maize	nucleus	41.12	36.07
Bra005104.1-P	Field mustard	nucleus	29.53	34.57
Bra022786.1-P	Field mustard	nucleus	23.93	33.86
Bra017117.1-P	Field mustard	nucleus	29.16	33.69
Bra026554.1-P	Field mustard	nucleus	29.91	33.68
Bra016716.1-P	Field mustard	nucleus	28.97	33.33
Bra000064.1-P	Field mustard	nucleus	28.6	32.35
Bra028939.1-P	Field mustard	nucleus	26.92	32.07
Bra019697.1-P	Field mustard	nucleus	29.53	32.05
Bra026869.1-P	Field mustard	nucleus	28.6	31.88
Bra024780.1-P	Field mustard	nucleus	28.79	31.69
Bra026438.1-P	Field mustard	nucleus	30.84	30.9
Bra019105.1-P	Field mustard	nucleus	29.91	30.25
TraesCS2A01G189700.1	Wheat	nucleus	33.27	29.09
TraesCS2B01G217400.2	Wheat	nucleus	33.27	28.99
HORVU2Hr1G036320.1	Barley	nucleus	33.08	28.78
TraesCS2D01G198100.4	Wheat	nucleus	33.08	27.74
Bra002828.1-P	Field mustard	nucleus	33.64	26.75
Bra030848.1-P	Field mustard	nucleus	9.91	26.11
Bra023112.1-P	Field mustard	nucleus	20.19	25.71
Bra005210.1-P	Field mustard	nucleus	19.44	25.43
Bra013187.1-P	Field mustard	nucleus	20.93	25.06
Bra010266.1-P	Field mustard	nucleus	17.76	20.79
Bra030847.1-P	Field mustard	nucleus	14.95	17.9
Bra037106.1-P	Field mustard	nucleus	14.39	17.82
Bra024035.1-P	Field mustard	nucleus	17.94	16.3
Bra038006.1-P	Field mustard	nucleus	14.77	12.08

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra026414	EnsemblPlants:Bra026414.1	EnsemblPlants:Bra026414.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M4ECA5	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0002545565	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

AT4G26640 (E=3e-233) WRKY20, AtWRKY20 | WRKY20; transcription factor

Coordinates

chrA01:-:9431229..9434010

Molecular Weight (calculated)

59126.1 Da

IEP (calculated)

7.565

GRAVY (calculated)

-0.996

Length

535 amino acids

Sequence
(BLAST)

001: MNPQVNNDRK EFPVDPTARH DSSRGVGGNG GGGARYKLMS PAKLPISRST DIMIPPGLSP TSFLESPVFI SNIKPEPSPT TGSLFKPRPV HVSSSSYTGR
101: PFHQDSTEQK SSEFEFRPPA STMVYAELDN HKREPAVQFQ GQGYGSSHSP SSISEAAANS SELRRPTQSS DIPAGSELDE SVQASQNDPR GSAPSVLADD
201: GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSYD GQITDIIYKG THDHPKPQPG RRNSCGLGMS AQEERVEKSV YNLSQAIEQV GNPEVPPTTE
301: DGGEVAVSNK SKDDQDEDDP YTKRRRLDGT MEITPLVKPI REPRVVVQTL SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTAPGCPVR KHVERASHDP
401: KAVITTYEGK HNHDVPTSKS SSNHHDNQPR FRPGETDTVS LNLGVGISSD GPDHTSNERQ HQNQQQLINQ THPNGVGFRF VHAAPVASYY ASLNGGLNQY
501: APRETQNETQ NGDISSLNHS SYPYPHNIGR IQSGP

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.