Factsheet for GSMUA_Achr4P13970_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P29850_001	Banana	nucleus	73.88	65.8
GSMUA_Achr7P25840_001	Banana	nucleus	31.19	64.78
Os07t0583700-01	Rice	nucleus	56.53	46.93
Zm00001d006702_P001	Maize	nucleus	55.17	46.39
KXG36569	Sorghum	nucleus	55.17	46.32
VIT_19s0090g01720.t01	Wine grape	nucleus	52.83	45.93
Zm00001d021947_P002	Maize	nucleus	54.39	45.51
VIT_00s0463g00010.t01	Wine grape	nucleus	52.83	44.28
Bra028971.1-P	Field mustard	nucleus	41.72	44.12
KRH46302	Soybean	nucleus	47.37	42.11
KRG98564	Soybean	nucleus	47.37	42.11
KRH14276	Soybean	nucleus	47.56	41.71
CDX89317	Canola	nucleus	43.27	41.57
PGSC0003DMT400076670	Potato	nucleus	49.51	41.57
CDY70490	Canola	nucleus	41.91	41.51
CDX94303	Canola	nucleus	42.88	41.35
Bra026414.1-P	Field mustard	nucleus	43.08	41.31
KRH73864	Soybean	nucleus	47.17	41.16
Solyc12g014610.1.1	Tomato	nucleus	48.54	40.75
CDX92808	Canola	nucleus	41.33	40.46
AT4G26640.2	Thale cress	nucleus	43.86	40.4
CDY46692	Canola	nucleus	40.94	40.0
PGSC0003DMT400057409	Potato	nucleus	46.2	39.77
Solyc07g065260.2.1	Tomato	nucleus	46.0	39.6
CDX97359	Canola	nucleus	40.94	39.11
CDY14304	Canola	nucleus	41.33	38.76
Bra010431.1-P	Field mustard	nucleus	41.13	38.72
GSMUA_Achr3P09940_001	Banana	nucleus	27.49	38.52
GSMUA_Achr6P16760_001	Banana	nucleus	31.58	33.61
GSMUA_Achr4P14270_001	Banana	nucleus	29.43	33.41
GSMUA_Achr11P...	Banana	nucleus	30.21	33.26
VIT_12s0057g00550.t01	Wine grape	nucleus	25.93	33.0
KRH49522	Soybean	extracellular, plasma membrane	16.18	32.94
GSMUA_Achr10P...	Banana	nucleus	29.43	32.61
GSMUA_Achr6P32720_001	Banana	nucleus	28.85	32.46
GSMUA_Achr7P26450_001	Banana	nucleus	30.21	32.43
GSMUA_Achr7P00610_001	Banana	nucleus	30.41	32.37
GSMUA_Achr4P07230_001	Banana	nucleus	29.63	32.34
GSMUA_Achr6P03500_001	Banana	nucleus	30.99	30.87
GSMUA_Achr5P23900_001	Banana	nucleus	33.92	30.8
TraesCS2A01G189700.1	Wheat	nucleus	36.65	30.72
TraesCS2B01G217400.2	Wheat	nucleus	36.65	30.62
HORVU2Hr1G036320.1	Barley	nucleus	36.65	30.57
CDX93073	Canola	nucleus	21.44	29.89
GSMUA_Achr1P17160_001	Banana	nucleus	23.78	29.68
GSMUA_Achr8P01790_001	Banana	nucleus	32.75	29.47
Solyc12g006170.1.1	Tomato	nucleus	23.78	29.4
TraesCS2D01G198100.4	Wheat	nucleus	36.45	29.31
Solyc07g047960.2.1	Tomato	nucleus	23.2	28.81
Bra019095.1-P	Field mustard	nucleus	40.94	27.85
GSMUA_Achr11P...	Banana	nucleus	35.09	27.82
GSMUA_Achr4P01600_001	Banana	nucleus	36.06	27.78
GSMUA_Achr5P04150_001	Banana	nucleus	33.92	27.49
PGSC0003DMT400015754	Potato	nucleus	22.42	27.25
GSMUA_Achr4P16840_001	Banana	nucleus	22.22	27.08
GSMUA_AchrUn_...	Banana	nucleus	23.78	26.64
CDY50038	Canola	nucleus	22.61	26.61
Bra013187.1-P	Field mustard	nucleus	22.81	26.17
GSMUA_Achr10P...	Banana	nucleus	23.78	25.79
KRH74020	Soybean	nucleus	24.56	24.85
KRH14103	Soybean	nucleus	24.56	24.8
PGSC0003DMT400074158	Potato	nucleus	24.76	23.13
AT2G04880.1	Thale cress	nucleus	21.83	23.0
GSMUA_Achr9P19580_001	Banana	nucleus	22.81	20.97

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr4G13970_001	EnsemblPlants:GSMUA_Achr4P13970_001	EnsemblPlants:GSMUA_Achr4T13970_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0SNR2	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI00029582C5	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Putative Probable WRKY transcription factor 20 [Source:GMGC_GENE;Acc:GSMUA_Achr4G13970_001]

Coordinates

chr4:+:10435530..10441164

Molecular Weight (calculated)

56181.6 Da

IEP (calculated)

5.741

GRAVY (calculated)

-0.732

Length

513 amino acids

Sequence
(BLAST)

001: MSPARLPIAR APCLTIPPGF SPSALLESPV LLTNMKAEPS PTTGTFNMCS IMDKTVCIEV LSSTRDTSDV NAYDGGNSGD FEFKPHGRAS YNPDLSSLKP
101: SGSVGLIQEE NMPSMQIPSQ SQGSGELQQA KSLEQSTQML QSDPSEPTPS SILERSAEDG YNWRKYGQKH VKGSEYPRSY YKCTHPHCQM KKQIERSQDG
201: QITEIIYKGR HDHPKPQPNR RSAIGAVLSS QEEEKPAEFS SLMGAEDKSA NVPFHITHQV DPNGTTELSP ALVSENDVEI GGGQSNNCNE VVGDGDPESK
301: RRKMENANIE SASIGKMNRE PRVVVQTVSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNSGCPVRKH VERASHDPKA VITTYEGKHN HDVPAAKTIS
401: HEMITTGESS LKESDTVSLD LGVGIIPCQS NISNEQQQPL EIEQLQHYQP QSMDCGKLVI QTTSLSSLNG SSHTTRIYES GEVEGEGFTF KATPIDPSSN
501: LYYTTAGNLV MGP

Best Arabidopsis Sequence Match ( AT4G26640.7 )
(BLAST)

001: MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP
101: PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN
201: CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD
301: DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP
401: TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN
501: NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.