CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46302	Soybean	nucleus	94.8	94.8
KRH73864	Soybean	nucleus	77.3	75.85
KRH14276	Soybean	nucleus	76.08	75.04
KRH55277	Soybean	nucleus	26.34	71.7
VIT_19s0090g01720.t01	Wine grape	nucleus	62.74	61.36
Solyc12g014610.1.1	Tomato	nucleus	53.55	50.57
PGSC0003DMT400076670	Potato	nucleus	53.38	50.41
Solyc07g065260.2.1	Tomato	nucleus	50.61	48.99
PGSC0003DMT400057409	Potato	nucleus	50.43	48.83
GSMUA_Achr7P25840_001	Banana	nucleus	20.8	48.58
GSMUA_Achr4P13970_001	Banana	nucleus	42.11	47.37
Os07t0583700-01	Rice	nucleus	46.79	43.69
KRH49522	Soybean	extracellular, plasma membrane	19.06	43.65
GSMUA_Achr3P29850_001	Banana	nucleus	42.81	42.88
Zm00001d021947_P002	Maize	nucleus	45.23	42.58
KXG36569	Sorghum	nucleus	44.54	42.06
Zm00001d006702_P001	Maize	nucleus	44.37	41.97
KRH70820	Soybean	nucleus, plastid	23.57	37.36
KRG98195	Soybean	nucleus	33.97	36.16
KRH34225	Soybean	nucleus	11.96	35.94
KRH30155	Soybean	nucleus	33.62	35.4
KRH17125	Soybean	nucleus	34.66	34.78
KRH72765	Soybean	nucleus	34.32	34.14
KRH76058	Soybean	nucleus	29.64	33.73
KRH65526	Soybean	nucleus	29.46	33.53
KRH50544	Soybean	nucleus	24.78	32.35
TraesCS2A01G189700.1	Wheat	nucleus	34.14	32.19
TraesCS2B01G217400.2	Wheat	nucleus	33.97	31.92
KRH00362	Soybean	nucleus	29.81	31.79
HORVU2Hr1G036320.1	Barley	nucleus	33.8	31.71
KRG89512	Soybean	nucleus	23.92	31.44
KRH40825	Soybean	nucleus	29.46	31.31
KRH74950	Soybean	nucleus	24.61	31.21
KRH44949	Soybean	nucleus	28.08	30.98
KRH01236	Soybean	nucleus	27.9	30.96
TraesCS2D01G198100.4	Wheat	nucleus	33.62	30.41
KRH67621	Soybean	nucleus	23.05	29.69
KRG95903	Soybean	nucleus	23.4	28.66
KRH03056	Soybean	nucleus	5.55	27.12
KRH74020	Soybean	nucleus	22.88	26.04
KRH14103	Soybean	nucleus	22.53	25.59
KRH62550	Soybean	nucleus	32.93	24.97
KRH56379	Soybean	nucleus	33.28	24.74
KRH40304	Soybean	nucleus	31.37	24.66
KRH34226	Soybean	nucleus	14.21	24.4
KRH00919	Soybean	nucleus	31.2	24.19
KRH26105	Soybean	nucleus	18.2	22.48
KRH54934	Soybean	nucleus	18.02	22.13
KRH72303	Soybean	nucleus	17.68	19.14
KRH34224	Soybean	nucleus	11.96	18.8
KRH03057	Soybean	nucleus	11.96	17.88

Protein Annotations

EntrezGene:100781491	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02010899	EnsemblPlantsGene:GLYMA_18G081200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1N0D3	InterPro:IPR003657
InterPro:IPR036576	EnsemblPlants:KRG98564	ProteinID:KRG98564	ProteinID:KRG98564.1	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000233EE61	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:7832888..7838106

Molecular Weight (calculated)

62555.3 Da

IEP (calculated)

6.419

GRAVY (calculated)

-0.750

Length

577 amino acids

Sequence
(BLAST)

001: MDAGEALSDD PNRPNSAADA APATAGARYK LMSPAKLPIS RSPCVTIPPG LSPTSFLESP VLLSNMKVEP SPTTGSLSLL HQTAHGSVTS AASSTFPVTT
101: VCFNTNTVDD RKPSFFEFKP HNRSNMVPAD FDNHASEKST QIDGQGKAQA FDSSPLVKNE SASPSNELSL SSPVQMDCSG GSARVEGDLD ELNPRSNITT
201: GLQASQVDNR GSGLSVAADR VSDDGYNWRK YGQKHVKGSE FPRSYYKCTH PNCEVKKLFE RSHDGQITEI IYKGTHDHPK PQPNRRYSAG TIMSVQEERS
301: DKVSLTSRDG NGSYMCGQGS HLAEPDSQPE LSPVATNDGD LDGLGVLSNR NNDEVDDDDP FSKRRKMDLG IADITPVVKP IREPRVVVQT LSEVDILDDG
401: YRWRKYGQKV VRGNPNPRSY YKCTNTGCPV RKHVERASHD PKAVITTYEG KHNHDVPTAR NSCHDMAGPA SASGQTRIRP EESDTISLDL GMGISPAAEN
501: TPNSQGRMML SEFGDSQTHT SNSNFNFVHT TTVPGYFGVL NNNSNPYGSR ENPSDGPSLN HSAYPCPQNI GRILMGP

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.