CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73864	Soybean	nucleus	94.19	93.71
KRH55277	Soybean	nucleus	29.4	81.13
KRG98564	Soybean	nucleus	75.04	76.08
KRH46302	Soybean	nucleus	74.19	75.22
VIT_19s0090g01720.t01	Wine grape	nucleus	61.37	60.85
PGSC0003DMT400076670	Potato	nucleus	55.38	53.03
Solyc12g014610.1.1	Tomato	nucleus	54.7	52.37
GSMUA_Achr7P25840_001	Banana	nucleus	21.71	51.42
Solyc07g065260.2.1	Tomato	nucleus	52.14	51.17
PGSC0003DMT400057409	Potato	nucleus	51.79	50.84
GSMUA_Achr4P13970_001	Banana	nucleus	41.71	47.56
KRH49522	Soybean	extracellular, plasma membrane	19.32	44.84
Os07t0583700-01	Rice	nucleus	44.96	42.56
Zm00001d021947_P002	Maize	nucleus	44.44	42.41
KXG36569	Sorghum	nucleus	43.76	41.9
GSMUA_Achr3P29850_001	Banana	nucleus	41.03	41.67
Zm00001d006702_P001	Maize	nucleus	43.25	41.48
KRH70820	Soybean	nucleus, plastid	23.08	37.09
KRG98195	Soybean	nucleus	33.85	36.53
KRH34225	Soybean	nucleus	11.97	36.46
KRH17125	Soybean	nucleus	35.38	36.0
KRH30155	Soybean	nucleus	33.5	35.77
KRH72765	Soybean	nucleus	35.38	35.69
KRH00362	Soybean	nucleus	30.77	33.27
KRH65526	Soybean	nucleus	28.55	32.94
KRH76058	Soybean	nucleus	28.55	32.94
KRH74950	Soybean	nucleus	25.13	32.31
KRH40825	Soybean	nucleus	29.91	32.23
TraesCS2A01G189700.1	Wheat	nucleus	33.68	32.19
TraesCS2B01G217400.2	Wheat	nucleus	33.5	31.92
KRH50544	Soybean	nucleus	24.1	31.9
HORVU2Hr1G036320.1	Barley	nucleus	33.5	31.87
KRG89512	Soybean	nucleus	23.42	31.21
KRH01236	Soybean	nucleus	27.35	30.77
KRH44949	Soybean	nucleus	27.35	30.59
TraesCS2D01G198100.4	Wheat	nucleus	33.16	30.41
KRH67621	Soybean	nucleus	23.25	30.36
KRG95903	Soybean	nucleus	23.76	29.51
KRH03056	Soybean	nucleus	5.47	27.12
KRH74020	Soybean	nucleus	23.42	27.02
KRH14103	Soybean	nucleus	23.08	26.57
KRH62550	Soybean	nucleus	33.68	25.89
KRH56379	Soybean	nucleus	33.68	25.39
KRH40304	Soybean	nucleus	31.45	25.07
KRH00919	Soybean	nucleus	30.94	24.33
KRH34226	Soybean	nucleus	13.5	23.51
KRH54934	Soybean	nucleus	18.46	22.98
KRH26105	Soybean	nucleus	18.29	22.91
KRH72303	Soybean	nucleus	18.12	19.89
KRH03057	Soybean	nucleus	12.31	18.65
KRH34224	Soybean	nucleus	10.6	16.89

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:547723	EMBL:ACUP02008495	EnsemblPlantsGene:GLYMA_14G016200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1M6J3	InterPro:IPR003657
InterPro:IPR036576	EnsemblPlants:KRH14276	ProteinID:KRH14276	ProteinID:KRH14276.1	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00023D3C6A	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:1154838..1160434

Molecular Weight (calculated)

63254.5 Da

IEP (calculated)

7.867

GRAVY (calculated)

-0.696

Length

585 amino acids

Sequence
(BLAST)

001: MDGTTNSGEP RSSSVLQNTG ASEDPNRSGS GQNSMARYKL MSPAKLPISR SPCITIPPGL SPTSFLESPV LLSNMKVEAS PTTGSLRKLQ QTMHGSMASA
101: AFPVTTACFD TNTVDDRKSS FFEFKPLSRS NMVPADFNNH VSKQSTQVEG PGKTQSFASS PLVESEIAVP SNELSLSSPV QKVSSSASAP VDVDLDDINH
201: KGNTATGLQA SHVEVRGSGL SVAAEKTSDD GYNWRKYGQK LVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITEIVYKG THDHPKPQPS CRYSTGTVMS
301: IQGERSDKAS MAGRDDKATA MYGQVSHAAE PNSTPESSPV ATNDDGLEGV AGFVSNRTNE EVDNDDPFSK RRKMELGNVD ITPVVKPIRE PRVVVQTLSE
401: VDILDDGYRW RKYGQKVVRG NPNPRSYYKC TNAGCPVRKH VERASHDPKA VITTYEGKHN HDVPAARNSS HDMAVPAAAA GGQTRTKLEE SDTISLDLGM
501: GISSAAEHRS NGQGKMLHSE FGDTQTHTSS SNFKFVHTTS APVYFGVLHN SSNPFGSRDN RSDGPSLNRS SYPCPQSMGR ILMGP

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.