Factsheet for TraesCS2D01G198100.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G217400.2	Wheat	nucleus	95.14	98.86
HORVU2Hr1G036320.1	Barley	nucleus	92.95	96.42
TraesCS2A01G189700.1	Wheat	nucleus	92.48	96.41
GSMUA_Achr7P25840_001	Banana	nucleus	15.05	38.87
KXG36569	Sorghum	nucleus	36.05	37.64
Os07t0583700-01	Rice	nucleus	36.36	37.54
Bra028971.1-P	Field mustard	nucleus	28.37	37.32
Zm00001d006702_P001	Maize	nucleus	35.58	37.21
Zm00001d021947_P002	Maize	nucleus	35.74	37.19
GSMUA_Achr4P13970_001	Banana	nucleus	29.31	36.45
CDY70490	Canola	nucleus	28.84	35.52
CDX92808	Canola	nucleus	28.37	34.54
TraesCS1D01G072900.1	Wheat	nucleus	24.61	33.84
KRH49522	Soybean	extracellular, plasma membrane	13.32	33.73
KRG98564	Soybean	nucleus	30.41	33.62
CDX89317	Canola	nucleus	28.06	33.52
KRH46302	Soybean	nucleus	30.25	33.45
VIT_19s0090g01720.t01	Wine grape	nucleus	30.88	33.39
CDY46692	Canola	nucleus	27.43	33.33
CDX94303	Canola	nucleus	27.74	33.27
KRH14276	Soybean	nucleus	30.41	33.16
Bra026414.1-P	Field mustard	nucleus	27.74	33.08
GSMUA_Achr3P29850_001	Banana	nucleus	29.78	32.99
CDX97359	Canola	nucleus	27.59	32.77
KRH73864	Soybean	nucleus	29.94	32.48
Bra010431.1-P	Field mustard	nucleus	27.59	32.29
VIT_12s0057g00550.t01	Wine grape	nucleus	20.38	32.26
AT4G26640.2	Thale cress	nucleus	28.06	32.14
PGSC0003DMT400057409	Potato	nucleus	29.94	32.05
CDY14304	Canola	nucleus	27.43	31.99
Solyc12g014610.1.1	Tomato	nucleus	30.41	31.75
VIT_00s0463g00010.t01	Wine grape	nucleus	30.41	31.7
PGSC0003DMT400076670	Potato	nucleus	30.25	31.59
Solyc07g065260.2.1	Tomato	nucleus	29.47	31.54
TraesCS1D01G292700.1	Wheat	nucleus, plastid	23.82	29.98
TraesCS3D01G341100.1	Wheat	nucleus	25.39	28.88
Solyc07g047960.2.1	Tomato	nucleus	18.5	28.57
CDX93073	Canola	nucleus	16.3	28.26
TraesCS5D01G116100.1	Wheat	nucleus	21.79	27.97
TraesCS5D01G406500.1	Wheat	nucleus	18.34	27.86
PGSC0003DMT400015754	Potato	nucleus	18.34	27.73
Solyc12g006170.1.1	Tomato	nucleus	17.71	27.23
TraesCS5D01G266300.1	Wheat	nucleus	28.06	26.4
TraesCS4D01G151700.1	Wheat	nucleus	20.06	26.39
TraesCS7D01G239800.2	Wheat	nucleus	25.71	26.11
CDY50038	Canola	nucleus	17.24	25.23
TraesCS2D01G190500.1	Wheat	nucleus	17.71	24.67
Bra013187.1-P	Field mustard	nucleus	17.08	24.38
TraesCS2D01G332300.1	Wheat	nucleus	28.06	24.35
KRH74020	Soybean	nucleus	18.97	23.87
KRH14103	Soybean	nucleus	18.81	23.62
Bra019095.1-P	Field mustard	nucleus	27.74	23.47
AT2G04880.1	Thale cress	nucleus	17.24	22.59
PGSC0003DMT400074158	Potato	nucleus	18.34	21.31
TraesCS7D01G287200.1	Wheat	nucleus	16.93	20.69

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF79	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS2D01G198100	EnsemblPlants:TraesCS2D01G198100.4
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:+:145885591..145892747

Molecular Weight (calculated)

69050.7 Da

IEP (calculated)

7.205

GRAVY (calculated)

-0.784

Length

638 amino acids

Sequence
(BLAST)

001: MADSPNPSPG DLPSAAGSSP EKPHPADRRV AALAGAGARY KAMSPARLPI SREPCLTIPA GFSPSALLDS PVLLTNFKVE PSPTTGSLSM AAIMHKSAHP
101: DILPSPRDKS IRAHEDGGSR DFEFKPHLNS SSQSLAPAMS DLKKHEHSMQ NQSMNPSSSS SNMVNENRPP CSRESSLTVN VSAPNQPVGM VGLTDNMPAE
201: VGTSEPQQMN SSDNAMQEPQ SENVADKSAD DGYNWRKYGQ KHVKGSENPR SYYKCTHPNC EVKKLLERAV DGLITEVVYK GRHNHPKPQP NRRLAGGAVP
301: SNQGEERYDG AAAADDKSSN ALSNLANPVN SPGMVEPVPV SVSDDDIDAG GGRPYPGDDA TEEEDLELKR RKMESAGIDA ALMGKPNREP RVVVQTVSEV
401: DILDDGYRWR KYGQKVVKGN PNPRLHVRSD QRIIGFPCTS SKRQMNSWSY YKCTSTGCPV RKHVERASHD PKSVITTYEG KHNHEVPAAR NATHEMSAPP
501: MKNVVHQINS NMPSSIGGMM RACEARNFTN QYSQAAETDT VSLDLGVGIS PNHSDATNQM QSSGPDQMQY QMQSMASMYG NMRHPSSMAV PTVQGNSAGR
601: MYGSREEKGN EGFTFRATPM DHSANLCYSG AGNLVMGP

Best Arabidopsis Sequence Match ( AT4G26640.1 )
(BLAST)

001: MILLPEPSPT TGSLFKPRPV HISASSSSYT GRGFHQNTFT EQKSSEFEFR PPASNMVYAE LGKIRSEPPV HFQGQGHGSS HSPSSISDAA GSSSELSRPT
101: PPCQMTPTSS DIPAGSDQEE SIQTSQNDSR GSTPSILADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITDIIYKG THDHPKPQPG
201: RRNSGGMAAQ EERLDKYPSS TGRDEKGSGV YNLSNPNEQT GNPEVPPISA SDDGGEAAAS NRNKDEPDDD DPFSKRRRME GAMEITPLVK PIREPRVVVQ
301: TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTAHGCP VRKHVERASH DPKAVITTYE GKHDHDVPTS KSSSNHEIQP RFRPDETDTI SLNLGVGISS
401: DGPNHASNEH QHQNQQLVNQ THPNGVNFRF VHASPMSSYY ASLNSGMNQY GQRETKNETQ NGDISSLNNS SYPYPPNMGR VQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.