Factsheet for PGSC0003DMT400015754

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g047960.2.1	Tomato	nucleus	89.81	91.77
PGSC0003DMT400074158	Potato	nucleus	59.72	45.9
VIT_12s0057g00550.t01	Wine grape	nucleus	36.49	38.21
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	13.27	34.78
CDX93073	Canola	nucleus	27.73	31.79
KRH74020	Soybean	nucleus	36.97	30.77
CDY50038	Canola	nucleus	30.57	29.59
KRH14103	Soybean	nucleus	35.55	29.53
Bra013187.1-P	Field mustard	nucleus	30.57	28.86
GSMUA_Achr7P25840_001	Banana	nucleus	16.35	27.94
AT2G04880.1	Thale cress	nucleus	31.28	27.1
PGSC0003DMT400072836	Potato	nucleus	28.2	23.43
PGSC0003DMT400003637	Potato	nucleus	24.64	23.06
GSMUA_Achr4P13970_001	Banana	nucleus	27.25	22.42
PGSC0003DMT400014220	Potato	nucleus	27.25	22.29
PGSC0003DMT400043204	Potato	nucleus	27.73	21.91
PGSC0003DMT400030388	Potato	nucleus	20.85	21.57
PGSC0003DMT400060042	Potato	nucleus	23.22	21.44
GSMUA_Achr3P29850_001	Banana	nucleus	28.91	21.18
PGSC0003DMT400076670	Potato	nucleus	30.09	20.79
PGSC0003DMT400057409	Potato	nucleus	28.91	20.47
PGSC0003DMT400028530	Potato	nucleus	22.51	20.34
KXG36569	Sorghum	nucleus	28.67	19.8
Zm00001d021947_P002	Maize	nucleus	28.44	19.58
Zm00001d006702_P001	Maize	nucleus	27.96	19.34
Os07t0583700-01	Rice	nucleus	28.2	19.26
TraesCS2B01G217400.2	Wheat	nucleus	27.96	19.22
TraesCS2A01G189700.1	Wheat	nucleus	27.73	19.12
HORVU2Hr1G036320.1	Barley	nucleus	27.73	19.02
TraesCS2D01G198100.4	Wheat	nucleus	27.73	18.34
PGSC0003DMT400056952	Potato	nucleus	30.81	17.38
PGSC0003DMT400029069	Potato	mitochondrion	4.74	16.39
PGSC0003DMT400029328	Potato	nucleus	25.59	15.49

Protein Annotations

EntrezGene:102596618	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1A6I4	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400006155	PGSC:PGSC0003DMG400006155	EnsemblPlants:PGSC0003DMT400015754	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000295EEF3	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006363023.1
SEG:seg	:	:	:	:	:

Description

Thermal hysteresis protein STHP-64 [Source:PGSC_GENE;Acc:PGSC0003DMG400006155]

Coordinates

chr7:-:44501932..44507039

Molecular Weight (calculated)

46544.8 Da

IEP (calculated)

7.027

GRAVY (calculated)

-1.026

Length

422 amino acids

Sequence
(BLAST)

001: MGVSKDDVSQ SNQEDSSLSN VPEKDTEYVH QKKGPESEGG ASESSRVSVL PKKEPYIISC KSDSPVKDGN ISLVPGKASD SSQQIQSQKM EEVVSQPHQE
101: QVTSSPMAEN ALCKLRSRRN PDMSVQDLPS DKGVTPFSEP EKPSKDGYNW RKYGQKLVRG NEFTRSYYKC TRINCLAKKQ VERSQDGHIT NIHYIAKHEH
201: PKPLNSPQIS PELVVPSEMT QPDMPTETPR EAEGEKSTVL GEACQSIEPS ESLISVAVVS AGGSAQDTVL KPHKSGDEGD NNDGRNSKRR KKEVPTSDDM
301: TPPMKSPSEL RHIVQTSSEV DIVNDGYRWR KYGQKFVKGN PNPRSYYRCS SVGCPAKKHV ERSSHNPKSV ITAYEGQHDH DIPSSRTVMQ NTAEADSNTT
401: RISGESTSES GENKHVVHIG AN

Best Arabidopsis Sequence Match ( AT4G26640.1 )
(BLAST)

001: MILLPEPSPT TGSLFKPRPV HISASSSSYT GRGFHQNTFT EQKSSEFEFR PPASNMVYAE LGKIRSEPPV HFQGQGHGSS HSPSSISDAA GSSSELSRPT
101: PPCQMTPTSS DIPAGSDQEE SIQTSQNDSR GSTPSILADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITDIIYKG THDHPKPQPG
201: RRNSGGMAAQ EERLDKYPSS TGRDEKGSGV YNLSNPNEQT GNPEVPPISA SDDGGEAAAS NRNKDEPDDD DPFSKRRRME GAMEITPLVK PIREPRVVVQ
301: TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTAHGCP VRKHVERASH DPKAVITTYE GKHDHDVPTS KSSSNHEIQP RFRPDETDTI SLNLGVGISS
401: DGPNHASNEH QHQNQQLVNQ THPNGVNFRF VHASPMSSYY ASLNSGMNQY GQRETKNETQ NGDISSLNNS SYPYPPNMGR VQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.