Factsheet for PGSC0003DMT400046529

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030388	Potato	nucleus	43.48	17.16
PGSC0003DMT400043204	Potato	nucleus	47.2	14.23
PGSC0003DMT400076670	Potato	nucleus	51.55	13.58
PGSC0003DMT400015754	Potato	nucleus	34.78	13.27
PGSC0003DMT400057409	Potato	nucleus	47.83	12.92
PGSC0003DMT400003637	Potato	nucleus	35.4	12.64
PGSC0003DMT400028530	Potato	nucleus	35.4	12.21
PGSC0003DMT400072836	Potato	nucleus	38.51	12.2
PGSC0003DMT400014220	Potato	nucleus	38.51	12.02
PGSC0003DMT400060042	Potato	nucleus	31.06	10.94
PGSC0003DMT400074158	Potato	nucleus	36.65	10.75
PGSC0003DMT400056952	Potato	nucleus	44.72	9.63
PGSC0003DMT400029328	Potato	nucleus	35.4	8.18
PGSC0003DMT400029069	Potato	mitochondrion	1.24	1.64

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1BJ77
PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400018061	PGSC:PGSC0003DMG400018061	EnsemblPlants:PGSC0003DMT400046529	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	TMHMM:TMhelix	UniParc:UPI0002963FCE	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400018061]

Coordinates

chr00:+:34778677..34779162

Molecular Weight (calculated)

18126.4 Da

IEP (calculated)

6.916

GRAVY (calculated)

-0.342

Length

161 amino acids

Sequence
(BLAST)

001: MSCSSHLTDT LGFGSVFLLF VHFMNLAVYM YVPISLEISS ISTSAATDNK DLSPVTAERS SENGYNWGKY GQKLVKGTEF PRSYYKYTYP NCEVKKTFER
101: SPDGQITEIV YKGFHDHPKP QPSDRFTPGA LTSIQEDRDA CLTLLVQAVL YDIQSRKPSC I

Best Arabidopsis Sequence Match ( AT4G26640.3 )
(BLAST)

001: MTPTSSDIPA GSDQEESIQT SQNDSRGSTP SILADDGYNW RKYGQKHVKG SEFPRSYYKC THPNCEVKKL FERSHDGQIT DIIYKGTHDH PKPQPGRRNS
101: GGMAAQEERL DKYPSSTGRD EKGSGVYNLS NPNEQTGNPE VPPISASDDG GEAAASNRNK DEPDDDDPFS KRRRMEGAME ITPLVKPIRE PRVVVQTLSE
201: VDILDDGYRW RKYGQKVVRG NPNPRSYYKC TAHGCPVRKH VERASHDPKA VITTYEGKHD HDVPTSKSSS NHEIQPRFRP DETDTISLNL GVGISSDGPN
301: HASNEHQHQN QQLVNQTHPN GVNFRFVHAS PMSSYYASLN SGMNQYGQRE TKNETQNGDI SSLNNSSYPY PPNMGRVQSG P

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.