Factsheet for PGSC0003DMT400029328

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005680.1.1	Tomato	nucleus	83.93	83.21
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	8.18	35.4
PGSC0003DMT400003637	Potato	nucleus	20.23	31.26
PGSC0003DMT400043204	Potato	nucleus	23.1	30.15
PGSC0003DMT400072836	Potato	nucleus	21.95	30.12
HORVU7Hr1G049130.1	Barley	nucleus, plastid	10.47	29.8
HORVU0Hr1G004890.10	Barley	nucleus	23.96	27.74
PGSC0003DMT400014220	Potato	nucleus	20.52	27.71
HORVU5Hr1G072020.1	Barley	nucleus	26.69	27.51
PGSC0003DMT400060042	Potato	nucleus	17.79	27.13
KXG35872	Sorghum	nucleus	22.67	27.1
TraesCS5D01G266300.1	Wheat	nucleus	26.26	26.99
PGSC0003DMT400030388	Potato	nucleus	15.78	26.96
TraesCS5B01G257300.1	Wheat	nucleus	26.26	26.95
TraesCS5A01G258100.1	Wheat	nucleus	26.11	26.88
Zm00001d006001_P006	Maize	nucleus	22.09	26.83
Zm00001d020881_P002	Maize	nucleus	22.67	26.83
OQU80981	Sorghum	nucleus	26.11	26.57
PGSC0003DMT400076670	Potato	nucleus	22.96	26.19
TraesCS7D01G239800.2	Wheat	nucleus	23.39	25.96
PGSC0003DMT400057409	Potato	nucleus	22.09	25.84
Os08t0499300-01	Rice	nucleus	24.96	25.82
PGSC0003DMT400015754	Potato	nucleus	15.49	25.59
TraesCS7B01G136400.2	Wheat	nucleus, plastid	23.24	25.59
PGSC0003DMT400056952	Potato	nucleus	26.97	25.13
TraesCS2A01G330500.1	Wheat	nucleus	26.11	24.76
TraesCS7A01G240800.1	Wheat	nucleus	23.1	24.73
TraesCS2B01G351600.1	Wheat	nucleus	25.82	24.66
PGSC0003DMT400028530	Potato	nucleus	16.5	24.63
TraesCS2D01G332300.1	Wheat	nucleus	25.82	24.49
Zm00001d003331_P001	Maize	nucleus	24.68	24.47
Zm00001d052847_P001	Maize	nucleus	25.39	24.28
Os09t0481700-01	Rice	nucleus	21.95	24.17
Zm00001d025669_P001	Maize	nucleus	22.96	24.13
KXG26525	Sorghum	nucleus	25.39	23.92
PGSC0003DMT400074158	Potato	nucleus	16.5	20.95
PGSC0003DMT400029069	Potato	mitochondrion	3.3	18.85
Os04t0471700-00	Rice	nucleus	25.39	17.74

Protein Annotations

EntrezGene:102583544	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1ASL7	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400011271	PGSC:PGSC0003DMG400011271	EnsemblPlants:PGSC0003DMT400029328	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002968566	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006352570.1
SEG:seg	:	:	:	:	:

Description

WRKY DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011271]

Coordinates

chr10:+:751714..755910

Molecular Weight (calculated)

75777.8 Da

IEP (calculated)

4.871

GRAVY (calculated)

-0.756

Length

697 amino acids

Sequence
(BLAST)

001: MAGFNDHVAS GHWIPPSPSP SPSSRALISS LLADDFGWSA HLEETNESRN LVVKPQEHVT WCNSDGAQTG AMTDQTVNVS APSEQNTSSR GGLMERMVAR
101: TGFNVPRLNT DGLRPPFVSQ NQEVKSPYLS IAAGLSPSIL LYSPVLLYNP LVYPSPTTGL LPCASGNESR SVMLTTEAAD KRNETALGTN SSSSLSFNPI
201: METGGVNEFS QIEGSVHPNN SLQLHSMEAT QNEQICHETT DFPMFTEEDV RGSDKNPEIR TFNAVGGSTE HSPSLEEQQD EDSTDGDSSV EDGYNWIKYG
301: ENQAKGSEYP RSFYKCTHPN CLVKKERARY HKGHVTEIIY NGAHNHPKPL PNQISTLGSS SSFGDMQLDN VDPTGTGVNS ELALEIIQQG PTAGGLEWKN
401: DNLEATSLAD LHSEYCRGAA TLHSNDAPLG SADAVDISSA FTTDGDDHGT RGSASLDCED GGDESESKIR KIEPDATDTR SVSRSIRQPR IVVQTISEVD
501: VLDDGYRWRK YGQKVVKGNP NPRSYYKCTN PGCNVRKHVE RAPLDQRSVI TTYDGKHNHD VPAERSSSQV ISGASNSRSN PITTNAQDQV GRPEPKQLQK
601: TSKRYGRAPS FGPTSGSNSF ETNQQQGLTD LSMTGFNSDQ HQFSVPSHPY TGWLQPVNDA GFVLPEGEPM PDPNMNYSNA SSTYQQTMNG LPPGPQM

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.