Factsheet for Solyc10g005680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029328	Potato	nucleus	83.21	83.93
Solyc05g012770.2.1	Tomato	nucleus	20.2	27.95
Solyc06g066370.2.1	Tomato	nucleus	21.05	27.66
Solyc02g088340.2.1	Tomato	nucleus	18.07	27.61
Solyc05g055750.2.1	Tomato	nucleus	17.92	27.45
Solyc04g056360.2.1	Tomato	nucleus	15.65	27.43
HORVU0Hr1G004890.10	Barley	nucleus	23.04	26.91
Solyc09g014990.2.1	Tomato	nucleus	20.06	26.65
HORVU7Hr1G049130.1	Barley	nucleus, plastid	9.1	26.12
HORVU5Hr1G072020.1	Barley	nucleus	25.04	26.04
Solyc03g104810.2.1	Tomato	nucleus	17.92	25.93
TraesCS5D01G266300.1	Wheat	nucleus	24.89	25.81
KXG35872	Sorghum	nucleus	21.34	25.73
TraesCS5A01G258100.1	Wheat	nucleus	24.75	25.7
TraesCS5B01G257300.1	Wheat	nucleus	24.75	25.63
Zm00001d006001_P006	Maize	nucleus	20.91	25.61
OQU80981	Sorghum	nucleus	24.89	25.55
Solyc07g047960.2.1	Tomato	nucleus	14.79	25.18
Zm00001d020881_P002	Maize	nucleus	21.05	25.13
Os08t0499300-01	Rice	nucleus	24.04	25.07
Solyc12g006170.1.1	Tomato	nucleus	14.79	25.06
TraesCS7D01G239800.2	Wheat	nucleus	21.91	24.52
Solyc07g065260.2.1	Tomato	nucleus	20.77	24.5
Solyc12g014610.1.1	Tomato	nucleus	21.05	24.22
Solyc10g084380.1.1	Tomato	nucleus	14.51	24.17
TraesCS7B01G136400.2	Wheat	nucleus, plastid	21.76	24.17
TraesCS2A01G330500.1	Wheat	nucleus	24.89	23.81
TraesCS2B01G351600.1	Wheat	nucleus	24.61	23.7
TraesCS2D01G332300.1	Wheat	nucleus	24.75	23.67
Os09t0481700-01	Rice	nucleus	21.05	23.38
TraesCS7A01G240800.1	Wheat	nucleus	21.62	23.35
Zm00001d052847_P001	Maize	nucleus	24.18	23.32
Solyc07g066220.2.1	Tomato	nucleus	24.32	23.14
Zm00001d003331_P001	Maize	nucleus	23.04	23.04
Zm00001d025669_P001	Maize	nucleus	21.48	22.78
KXG26525	Sorghum	nucleus	23.61	22.43
Solyc07g005650.2.1	Tomato	nucleus	12.52	17.15
Os04t0471700-00	Rice	nucleus	24.18	17.03

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4CXA0	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc10g005680.1	EnsemblPlants:Solyc10g005680.1.1
UniParc:UPI000276C96B	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:551292..554630

Molecular Weight (calculated)

76129.9 Da

IEP (calculated)

4.998

GRAVY (calculated)

-0.695

Length

703 amino acids

Sequence
(BLAST)

001: MSGFNDLVPN GDWLPTSPSP SPSSRALISS LRADDFGWPA HLEEANESTC KNLVVEPQEH VNWSNSVGND GAQTGAMTNQ TVNVSAPSKQ NTSSRGGLME
101: RMAARTGFNV SRLNTDGLRP SFVSQNQEIK SPYLSIAAGL SPSILLYSPV MLYNSLTILP QVSPPTGLLP CASGNEGRSV MLMTEAADKM NETAFGTNSS
201: SYLSFNPIME TGGVNEFQIE GSVDPNNSLQ LHSMEATQNE QICNETTDIP MFTEEDVRGS DKNPEVRAFN AVGGITEHPP SLEKQQNEGA AGDTSVEDGH
301: NWIKYGENQV KGSEYPRSFY KCTHPNCLVK KEIARYHQGH VTEVIYNGAH KHPKPQPNQI SGPGSSSSFG DLQLDNVDPT GTGVNSDLAL ETVQQGPTAG
401: GLKRKNDNLE AISFAALHSE YCRGAATLHS NDAQLGSADT VDIASIFSTE GDDHGTCGSA PLDCDDGGYD PESKIRKIEA DATDTSSVSR SMKQPRIVVE
501: TISEVDVIED GYRWRKYGQK LVKGNPNPRS YYKCTNSGCS VRKHVERSPL DQMSVITSYD GKHNHDAPEE RSSIQVSSIA SIYRSNPIIT NAQDQVGRPE
601: PKQLQKNSRR YGRGPPFGST SGFNSSETNQ QQGLTGPSMT GFNSEQHQFS VPAYPYPGWP QPVNDAGFVL PEGKPMPNPN MNYSNASSTY QQTMNGLPPG
701: PQM

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.