CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89222
KXG39626

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	EER89222	AT2G43790.1	24830428
AT4G26440.1	KXG39626	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025669_P001	Maize	nucleus	75.54	84.31
Zm00001d003331_P001	Maize	nucleus	78.38	82.5
HORVU0Hr1G004890.10	Barley	nucleus	50.68	62.29
TraesCS2B01G351600.1	Wheat	nucleus	61.35	62.19
TraesCS2D01G332300.1	Wheat	nucleus	61.08	61.5
TraesCS2A01G330500.1	Wheat	nucleus	60.54	60.95
GSMUA_Achr5P23900_001	Banana	nucleus	35.14	46.02
Bra028939.1-P	Field mustard	nucleus	27.16	44.77
GSMUA_Achr6P03500_001	Banana	nucleus	30.81	44.27
GSMUA_Achr4P01600_001	Banana	nucleus	38.38	42.64
CDY11947	Canola	nucleus	32.43	41.81
CDY36788	Canola	nucleus	35.0	41.51
GSMUA_Achr11P...	Banana	nucleus	36.08	41.27
GSMUA_Achr5P04150_001	Banana	nucleus	35.0	40.92
CDY49388	Canola	nucleus	35.95	39.64
Bra002828.1-P	Field mustard	nucleus	35.95	39.52
CDX94335	Canola	nucleus	27.16	39.11
Os04t0471700-00	Rice	nucleus	51.76	38.38
KXG35872	Sorghum	nucleus	30.14	38.25
Bra026438.1-P	Field mustard	nucleus	27.57	38.2
CDX89336	Canola	nucleus	27.43	38.02
AT5G56270.1	Thale cress	nucleus	35.27	37.99
Bra019105.1-P	Field mustard	nucleus	26.89	37.62
CDY42736	Canola	nucleus	26.76	37.43
CDY69527	Canola	nucleus	27.43	37.38
AT4G26440.1	Thale cress	nucleus	28.65	37.32
OQU80981	Sorghum	nucleus	34.32	37.08
CDY32799	Canola	nucleus	29.46	36.27
EES16036	Sorghum	nucleus	22.3	33.27
KXG21728	Sorghum	nucleus	23.11	33.08
VIT_19s0015g01870.t01	Wine grape	nucleus	33.11	32.84
KXG33637	Sorghum	nucleus	24.59	32.73
KRH62550	Soybean	nucleus	32.7	31.8
EER93417	Sorghum	nucleus	18.11	31.6
EER94675	Sorghum	nucleus	21.22	31.53
KXG36569	Sorghum	nucleus	25.54	30.93
KRH56379	Soybean	nucleus	32.43	30.93
OQU78174	Sorghum	nucleus	22.84	26.04
PGSC0003DMT400029328	Potato	nucleus	23.92	25.39
Solyc10g005680.1.1	Tomato	nucleus	22.43	23.61
EES14907	Sorghum	nucleus	16.22	21.09

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1B6PLI0	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KXG26525	ProteinID:KXG26525
ProteinID:KXG26525.1	ProteinID:OQU81765.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF86
SMART:SM00774	EnsemblPlantsGene:SORBI_3006G115700	SUPFAM:SSF118290	UniParc:UPI00081AEAB8	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:48356715..48362695

Molecular Weight (calculated)

78245.4 Da

IEP (calculated)

7.262

GRAVY (calculated)

-0.660

Length

740 amino acids

Sequence
(BLAST)

001: MEGHVAMEWK DPKPGPESLM GFQTRGVRPD TVGGHSNEDA KPGFEKHGFS VDISSPQEEG RSLPLTPQFG QKTSPGSSLA ERMQARAGFK VPKLNMPFST
101: AAGADNSVPG APSPYLTIPP GLSPATLLES PVFVSNAMGQ PSPTTGKLFM SGSTNDNDPI RFGGPPVGDG PDAFSFKPLD LKSSHYTAEA MKEQNTQVSV
201: KTKTKTQPVQ EANLLGQLNQ QNHNVQTNMN IGGPHDSKLS RLASGTGACN EHVSPPDYGQ TAEEGGDARE DYPPAMAAAT APAEDGYSWR KYGQKQVKHS
301: EYPRSYFKCT HPNCQVKKKV ERSHEGHITE IIYKGAHNHP KPTPSRRPGV QVQPVHPFGD AGGAQQADAA ADNNLGSQSQ QANAAAEANH QPWRAGVQDG
401: MDAATSSPSV PGELCDSSAS MQQVEYAPRG FGSPEGADVT SAPSDEVDGG DRVTLGSMSH AGADAEGDEL ESKRRKVEAY AMDMSTASRA IREPRVVIQT
501: TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTHPGCTV RKHVERASHD LKSVITTYEG KHNHEVPAAR NSGGHPSTAA AATGAGGGGP RRPEHTSSVH
601: DGLMMRHLGG CGVPFGLPLQ PPSRDPLAPM GNYPTYPFTA LGGGGGSGGD GGLTSLPSLP MATGNLSAVE GLKLPMLATS SPLHHQHPLL RHRQAMQAAA
701: LAAAPMAQVK VEDNVAAGVT AAPSVYQQMV RSGLRLGHQM

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.