Factsheet for GSMUA_Achr6P03500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P19320_001
GSMUA_Achr5P06640_001
GSMUA_Achr6P33100_001
GSMUA_Achr9P04280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	GSMUA_Achr10P...	AT2G43790.1	24830428
AT4G26440.1	GSMUA_Achr2P19320_001	AT2G43790.1	24830428
AT4G26440.1	GSMUA_Achr5P06640_001	AT2G43790.1	24830428
AT4G26440.1	GSMUA_Achr6P33100_001	AT3G45640.1	24830428
AT4G26440.1	GSMUA_Achr9P04280_001	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028939.1-P	Field mustard	nucleus	41.75	47.88
GSMUA_Achr5P04150_001	Banana	nucleus	58.45	47.55
GSMUA_Achr4P01600_001	Banana	nucleus	60.58	46.85
GSMUA_Achr5P23900_001	Banana	nucleus	51.07	46.55
GSMUA_Achr11P...	Banana	nucleus	57.28	45.6
HORVU7Hr1G049130.1	Barley	nucleus, plastid	19.42	40.82
CDY11947	Canola	nucleus	42.91	38.5
CDY36788	Canola	nucleus	44.08	36.38
GSMUA_Achr3P09940_001	Banana	nucleus	25.83	36.34
GSMUA_Achr7P25840_001	Banana	nucleus	17.09	35.63
HORVU0Hr1G004890.10	Barley	nucleus	41.55	35.55
HORVU5Hr1G072020.1	Barley	nucleus	46.41	35.35
TraesCS5B01G257300.1	Wheat	nucleus	46.02	34.9
Bra002828.1-P	Field mustard	nucleus	45.44	34.77
CDY49388	Canola	nucleus	45.24	34.72
TraesCS5A01G258100.1	Wheat	nucleus	45.63	34.71
TraesCS5D01G266300.1	Wheat	nucleus	45.63	34.66
AT5G56270.1	Thale cress	nucleus	45.24	33.92
Os08t0499300-01	Rice	nucleus	44.08	33.68
CDX94335	Canola	nucleus	33.59	33.66
TraesCS2B01G351600.1	Wheat	nucleus	47.38	33.42
TraesCS2D01G332300.1	Wheat	nucleus	47.57	33.33
Bra026438.1-P	Field mustard	nucleus	34.56	33.33
TraesCS2A01G330500.1	Wheat	nucleus	47.38	33.2
CDX89336	Canola	nucleus	34.37	33.15
KXG35872	Sorghum	nucleus	37.48	33.1
CDY69527	Canola	nucleus	34.76	32.97
CDY42736	Canola	nucleus	33.79	32.89
Bra019105.1-P	Field mustard	nucleus	33.79	32.89
Os09t0481700-01	Rice	nucleus	39.61	32.23
AT4G26440.1	Thale cress	nucleus	35.34	32.04
GSMUA_Achr11P...	Banana	nucleus	28.93	31.97
Zm00001d020881_P002	Maize	nucleus	36.5	31.92
Zm00001d003331_P001	Maize	nucleus	43.3	31.72
Zm00001d006001_P006	Maize	nucleus	35.15	31.53
OQU80981	Sorghum	nucleus	41.94	31.53
TraesCS7D01G239800.2	Wheat	nucleus	38.45	31.53
Zm00001d025669_P001	Maize	nucleus	40.58	31.52
GSMUA_Achr7P00610_001	Banana	nucleus	29.32	31.33
GSMUA_Achr4P13970_001	Banana	nucleus	30.87	30.99
KXG26525	Sorghum	nucleus	44.27	30.81
TraesCS7B01G136400.2	Wheat	nucleus, plastid	37.86	30.81
GSMUA_Achr6P32720_001	Banana	nucleus	27.18	30.7
TraesCS7A01G240800.1	Wheat	nucleus	38.64	30.57
GSMUA_Achr4P14270_001	Banana	nucleus	26.8	30.53
GSMUA_Achr4P07230_001	Banana	nucleus	27.77	30.43
Zm00001d052847_P001	Maize	nucleus	42.72	30.18
CDY32799	Canola	nucleus	35.15	30.12
GSMUA_Achr10P...	Banana	nucleus	26.41	29.37
GSMUA_Achr6P16760_001	Banana	nucleus	27.18	29.05
GSMUA_Achr7P26450_001	Banana	nucleus	26.6	28.66
VIT_19s0015g01870.t01	Wine grape	nucleus	41.16	28.42
GSMUA_Achr4P16840_001	Banana	nucleus	22.91	28.03
PGSC0003DMT400056952	Potato	nucleus	40.39	27.81
GSMUA_Achr8P01790_001	Banana	nucleus	30.68	27.72
KRH62550	Soybean	nucleus	40.58	27.46
GSMUA_Achr1P17160_001	Banana	nucleus	21.75	27.25
Solyc07g066220.2.1	Tomato	nucleus	38.84	27.06
GSMUA_Achr3P29850_001	Banana	nucleus	29.71	26.56
KRH56379	Soybean	nucleus	39.22	26.03
Os04t0471700-00	Rice	nucleus	46.8	24.15
GSMUA_AchrUn_...	Banana	nucleus	20.0	22.49
GSMUA_Achr10P...	Banana	nucleus	20.0	21.78
GSMUA_Achr9P19580_001	Banana	nucleus	20.97	19.35

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G03500_001	EnsemblPlants:GSMUA_Achr6P03500_001	EnsemblPlants:GSMUA_Achr6T03500_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0T3U8	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0002960ED7	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Putative OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G03500_001]

Coordinates

chr6:+:2406489..2409370

Molecular Weight (calculated)

56711.8 Da

IEP (calculated)

7.989

GRAVY (calculated)

-0.785

Length

515 amino acids

Sequence
(BLAST)

001: MRRRNLDVTS FFCPLREKKL RFPSHRVKKG DGATSSPHFF CPHGGKKHCL NDARFLLPAT SLRLLLPAQM RRKFNLQESK DAIPDSFMSS DRSLPLDEQQ
101: EGDRDLRGEL SSVAVGAPAE DGYNWRKYGQ KQVKGSEYPR SYYKCTHLNC QVKKKVERSQ EGHFTEIIYK GEHNHPKPPP NRRSGVLLSN PFNDAEIDGH
201: DWQGDLEATS SAHVTAECCD PSAAVQQRPD GQRLSSDAID VSSTMSSGED EDDQATHGSV SLGCDGEGDE TESKRPKLDT SAIEMNAASR AVREPRVVVQ
301: TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHPGCN VRKHVERAAH DLKSVITTYE GKHNHDVPAA RNSGHPSSSP SNTTSNAGPQ PHGLLPRAES
401: TQGGLVRFEG HAPLGTFGLP GMEQLRPPTS FTFAMGQPGL MNLTMAGFGP LAPTKMSVPP SVHSYIGHGP PVEGLMIPKG EPNEEPMPET RLPMLNGGPV
501: YHQMTMNGVP LRPQL

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.