Factsheet for GSMUA_Achr3P09940_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P13020_001
GSMUA_Achr7P03200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	GSMUA_Achr10P...	AT3G18690.1	15990873
AT2G38470.1	GSMUA_Achr6P13020_001	AT3G18690.1	15990873
AT2G38470.1	GSMUA_Achr7P03200_001	AT3G18690.1	15990873
AT2G38470.1	GSMUA_Achr10P...	AT3G18690.1	18650934
AT2G38470.1	GSMUA_Achr6P13020_001	AT3G18690.1	18650934
AT2G38470.1	GSMUA_Achr7P03200_001	AT3G18690.1	18650934
AT2G38470.1	GSMUA_Achr10P...	AT3G18690.1	21203436
AT2G38470.1	GSMUA_Achr6P13020_001	AT3G18690.1	21203436
AT2G38470.1	GSMUA_Achr7P03200_001	AT3G18690.1	21203436

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P32720_001	Banana	nucleus	48.63	39.04
GSMUA_Achr11P...	Banana	nucleus	49.18	38.63
PGSC0003DMT400043204	Potato	nucleus	56.28	38.58
Solyc06g066370.2.1	Tomato	nucleus	56.28	38.5
KRH30155	Soybean	nucleus	54.64	36.5
KRG98195	Soybean	nucleus	53.83	36.35
KRH17125	Soybean	nucleus	56.28	35.83
KRH72765	Soybean	nucleus	56.56	35.69
Bra005104.1-P	Field mustard	nucleus	44.54	35.67
CDX91470	Canola	nucleus, plastid	45.63	35.08
CDY65564	Canola	nucleus, plastid	45.08	35.03
CDY69941	Canola	nucleus, plastid	45.08	34.59
Bra017117.1-P	Field mustard	nucleus	43.72	34.56
Os01t0826400-01	Rice	extracellular	52.19	34.41
VIT_06s0004g07500.t01	Wine grape	nucleus	56.28	34.16
CDY18383	Canola	nucleus, plastid	44.81	34.1
Bra000064.1-P	Field mustard	nucleus	43.99	34.04
CDY07729	Canola	nucleus	43.99	34.04
GSMUA_Achr7P25840_001	Banana	nucleus	22.95	34.01
TraesCS3B01G379200.1	Wheat	nucleus	51.91	33.99
TraesCS3A01G347500.1	Wheat	nucleus	51.91	33.81
TraesCS3D01G341100.1	Wheat	nucleus	51.64	33.69
Zm00001d043025_P001	Maize	nucleus	50.82	33.51
CDY14459	Canola	nucleus, plastid	44.54	33.27
Zm00001d038451_P001	Maize	nucleus	50.55	33.21
KXG33637	Sorghum	nucleus	50.27	33.09
GSMUA_Achr8P01790_001	Banana	nucleus	51.09	32.81
GSMUA_Achr4P14270_001	Banana	nucleus	40.44	32.74
TraesCS1A01G298600.1	Wheat	nucleus, plastid	44.81	32.48
TraesCS1B01G308200.1	Wheat	nucleus, plastid	45.08	32.42
TraesCS1D01G292700.1	Wheat	nucleus, plastid	44.81	32.35
HORVU1Hr1G070250.2	Barley	nucleus, plastid	44.81	32.03
Os05t0474800-01	Rice	nucleus	49.73	31.82
HORVU3Hr1G088200.4	Barley	nucleus, plastid	51.37	31.39
CDY48650	Canola	nucleus, plastid	37.7	31.15
AT2G38470.1	Thale cress	nucleus, plastid	43.72	30.83
GSMUA_Achr4P07230_001	Banana	nucleus	39.07	30.43
Zm00001d012482_P001	Maize	nucleus	49.18	30.35
GSMUA_Achr10P...	Banana	nucleus	37.16	29.37
GSMUA_Achr7P26450_001	Banana	nucleus	38.25	29.29
GSMUA_Achr7P00610_001	Banana	nucleus	37.43	28.42
OQU78174	Sorghum	nucleus	50.27	28.35
GSMUA_Achr6P16760_001	Banana	nucleus	36.89	28.01
GSMUA_Achr1P17160_001	Banana	nucleus	31.15	27.74
GSMUA_Achr4P16840_001	Banana	nucleus	31.69	27.55
GSMUA_Achr4P13970_001	Banana	nucleus	38.52	27.49
GSMUA_Achr5P23900_001	Banana	nucleus	40.71	26.37
GSMUA_Achr6P03500_001	Banana	nucleus	36.34	25.83
GSMUA_AchrUn_...	Banana	nucleus	31.15	24.89
GSMUA_Achr3P29850_001	Banana	nucleus	38.8	24.65
GSMUA_Achr5P04150_001	Banana	nucleus	41.53	24.01
GSMUA_Achr11P...	Banana	nucleus	42.35	23.96
GSMUA_Achr4P01600_001	Banana	nucleus	43.44	23.87
GSMUA_Achr10P...	Banana	nucleus	28.96	22.41
GSMUA_Achr9P19580_001	Banana	nucleus	30.33	19.89

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr3G09940_001	EnsemblPlants:GSMUA_Achr3P09940_001	EnsemblPlants:GSMUA_Achr3T09940_001	InterPro:IPR003657
InterPro:IPR036576	UniProt:M0SDB1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000295739F	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

Probable WRKY transcription factor 26 [Source:GMGC_GENE;Acc:GSMUA_Achr3G09940_001]

Coordinates

chr3:+:7213606..7215236

Molecular Weight (calculated)

40136.7 Da

IEP (calculated)

8.343

GRAVY (calculated)

-0.795

Length

366 amino acids

Sequence
(BLAST)

001: MASSTRSLGS SAASIYATFT ELLTGVGNSQ GEDMTRLEMS RELAGGDTGG TSKFKSAPPP FLPLSPPPPS ASFSFPTSLS LAELLESPLL LPSSSMLPSP
101: TTGSLPAQHL NWSGGERKPE VKVEDAVPIH ASSSQAVRGQ RRSDDGYNWR KYGQKQIKGS ENPVGYYKCT YPDCPTKKKV EMSIDGEITE IVYKGSHNHP
201: KPLSTRKLSA PLPSQTSDHR FADPVLTPEN SSVSCCGSEA KEFDDDEHDA KRSRKEDEGK YFSAPGNRTV REPRVVVQTP SDVDILDDGY RWRKYGQKVV
301: KANRNPRSYY KCTSNGCPVR KHVERASNDP RSVITTYEGK HNHDVPAART PQPDSAMADH VTLFPY

Best Arabidopsis Sequence Match ( AT5G07100.1 )
(BLAST)

001: MGSFDRQRAV PKFKTATPSP LPLSPSPYFT MPPGLTPADF LDSPLLFTSS NILPSPTTGT FPAQSLNYNN NGLLIDKNEI KYEDTTPPLF LPSMVTQPLP
101: QLDLFKSEIM SSNKTSDDGY NWRKYGQKQV KGSENPRSYF KCTYPNCLTK KKVETSLVKG QMIEIVYKGS HNHPKPQSTK RSSSTAIAAH QNSSNGDGKD
201: IGEDETEAKR WKREENVKEP RVVVQTTSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT FTGCFVRKHV ERAFQDPKSV ITTYEGKHKH QIPTPRRGPV
301: LRLLGKTET

Arabidopsis Description

WRKY26Probable WRKY transcription factor 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5T3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.