CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67903
CDX74352
CDX75979
CDX76661
CDX82333
CDX89148
CDX91889
CDX92261
CDX93962
CDX99326
CDY11447
CDY25117
CDY68488
CDY71738

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	CDX75979	AT3G18690.1	15990873
AT2G38470.1	CDX82333	AT3G18690.1	15990873
AT2G38470.1	CDX92261	AT3G18690.1	15990873
AT2G38470.1	CDX99326	AT3G18690.1	15990873
AT2G38470.1	CDY68488	AT3G18690.1	15990873
AT2G38470.1	CDY71738	AT3G18690.1	15990873
AT2G38470.1	CDX75979	AT3G18690.1	18650934
AT2G38470.1	CDX82333	AT3G18690.1	18650934
AT2G38470.1	CDX92261	AT3G18690.1	18650934
AT2G38470.1	CDX99326	AT3G18690.1	18650934
AT2G38470.1	CDY68488	AT3G18690.1	18650934
AT2G38470.1	CDY71738	AT3G18690.1	18650934
AT2G38470.1	CDX75979	AT3G18690.1	21203436
AT2G38470.1	CDX82333	AT3G18690.1	21203436
AT2G38470.1	CDX92261	AT3G18690.1	21203436
AT2G38470.1	CDX99326	AT3G18690.1	21203436
AT2G38470.1	CDY68488	AT3G18690.1	21203436
AT2G38470.1	CDY71738	AT3G18690.1	21203436
AT2G38470.1	CDX67903	AT3G62770.1	21395886
AT2G38470.1	CDX76661	AT3G62770.1	21395886
AT2G38470.1	CDX89148	AT3G62770.1	21395886
AT2G38470.1	CDX93962	AT3G62770.1	21395886
AT2G38470.1	CDY11447	AT3G62770.1	21395886
AT2G38470.1	CDY25117	AT3G62770.1	21395886
AT2G38470.1	CDX74352	AT4G01370.1	18650934
AT2G38470.1	CDX91889	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65564	Canola	nucleus, plastid	80.59	75.8
CDX91470	Canola	nucleus, plastid	81.04	75.42
Bra005104.1-P	Field mustard	nucleus	76.07	73.74
CDY69941	Canola	nucleus, plastid	75.62	70.23
CDY18383	Canola	nucleus, plastid	75.17	69.23
CDY14459	Canola	nucleus, plastid	73.36	66.33
CDY07729	Canola	nucleus	70.43	65.96
AT2G38470.1	Thale cress	nucleus, plastid	73.36	62.62
CDY05016	Canola	nucleus	28.44	39.5
CDY14055	Canola	nucleus	27.31	37.93
GSMUA_Achr11P...	Banana	nucleus	39.73	37.77
GSMUA_Achr3P09940_001	Banana	nucleus	31.15	37.7
CDX97834	Canola	nucleus	30.47	37.4
KRH17125	Soybean	nucleus	48.53	37.39
KRH72765	Soybean	nucleus	48.76	37.24
CDY29685	Canola	nucleus	29.35	37.14
CDY10720	Canola	nucleus	31.15	37.0
GSMUA_Achr6P32720_001	Banana	nucleus	37.92	36.84
CDX84848	Canola	nucleus	31.38	36.77
Solyc09g014990.2.1	Tomato	nucleus	43.34	36.29
CDY02051	Canola	nucleus	22.57	36.1
CDY24017	Canola	nucleus	30.7	35.98
KRG98195	Soybean	nucleus	42.66	34.87
KRH30155	Soybean	nucleus	43.12	34.85
VIT_08s0058g00690.t01	Wine grape	nucleus	43.34	34.78
Os01t0826400-01	Rice	extracellular	41.99	33.51
PGSC0003DMT400030388	Potato	nucleus	30.02	32.6
TraesCS1A01G298600.1	Wheat	nucleus, plastid	36.79	32.28
TraesCS3D01G341100.1	Wheat	nucleus	40.63	32.09
Zm00001d043025_P001	Maize	nucleus	40.18	32.07
KXG33637	Sorghum	nucleus	40.18	32.01
TraesCS3A01G347500.1	Wheat	nucleus	40.41	31.85
TraesCS3B01G379200.1	Wheat	nucleus	40.18	31.84
HORVU1Hr1G070250.2	Barley	nucleus, plastid	36.79	31.84
TraesCS1B01G308200.1	Wheat	nucleus, plastid	36.57	31.83
TraesCS1D01G292700.1	Wheat	nucleus, plastid	36.34	31.76
Os05t0474800-01	Rice	nucleus	39.05	30.24
HORVU3Hr1G088200.4	Barley	nucleus, plastid	40.63	30.05
CDX98138	Canola	nucleus	30.47	29.54
CDY36419	Canola	nucleus	30.25	29.45
Zm00001d012482_P001	Maize	nucleus	39.28	29.34
GSMUA_Achr8P01790_001	Banana	nucleus	37.7	29.3
Zm00001d038451_P001	Maize	nucleus	35.67	28.37
CDY53941	Canola	nucleus	27.77	27.95
CDY33788	Canola	nucleus	27.77	27.83
CDX96873	Canola	nucleus	29.12	27.68
CDY62213	Canola	nucleus	28.89	27.59
OQU78174	Sorghum	nucleus	38.6	26.35
CDX74281	Canola	nucleus	26.64	26.16
CDY03003	Canola	nucleus	28.67	25.97
CDY45169	Canola	nucleus	28.44	25.93
CDY16122	Canola	nucleus	26.19	25.89
CDY70490	Canola	nucleus	29.57	25.29
CDY46692	Canola	nucleus	29.35	24.76
CDX92808	Canola	nucleus	29.12	24.62
CDY37191	Canola	nucleus	26.86	24.49
CDX94303	Canola	nucleus	29.35	24.44
CDY69527	Canola	nucleus	29.8	24.31
CDX97359	Canola	nucleus	29.35	24.21
CDY42736	Canola	nucleus	28.89	24.2
CDX89317	Canola	nucleus	29.12	24.16
CDY11947	Canola	nucleus	31.15	24.04
CDX89336	Canola	nucleus	28.67	23.78
CDX94335	Canola	nucleus	27.54	23.74
CDY36788	Canola	nucleus	33.18	23.56
CDY14304	Canola	nucleus	28.89	23.4
CDY49388	Canola	nucleus	34.54	22.8
CDY72350	Canola	nucleus	7.45	22.76
CDX91348	Canola	nucleus	20.54	22.64
CDX74976	Canola	nucleus	19.86	22.11
CDY32799	Canola	nucleus	29.12	21.46
CDX93073	Canola	nucleus	17.38	20.92
CDX79729	Canola	nucleus	14.9	20.5
CDY46768	Canola	nucleus	14.9	20.43
CDY46769	Canola	nucleus	14.9	20.43
CDY50038	Canola	nucleus	19.64	19.95
CDY62292	Canola	nucleus	9.03	19.23
CDY62293	Canola	nucleus	8.8	19.21
CDY08253	Canola	nucleus	17.83	18.99
CDY26094	Canola	nucleus	17.83	18.99
CDY47546	Canola	nucleus	16.03	18.07
CDY47543	Canola	nucleus	11.29	17.67
CDY36463	Canola	nucleus	15.58	17.29
CDY10548	Canola	nucleus	16.03	16.47
CDY23265	Canola	nucleus	16.93	16.41
CDY59057	Canola	nucleus	16.48	16.33
CDY13396	Canola	nucleus	16.93	14.12
CDY67588	Canola	nucleus	15.8	13.57
CDY54360	Canola	nucleus	16.93	13.49
CDY52777	Canola	nucleus, plastid	4.29	11.11
CDX72277	Canola	nucleus	16.48	9.96

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:A0A078ICN4	UniProt:A0A078ICN4	EnsemblPlants:CDY48650	ProteinID:CDY48650
ProteinID:CDY48650.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00091511001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0004EE48F6	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaC07g27590DBnaC07g27590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICN4]

Coordinates

chrLK032785:-:1298..5639

Molecular Weight (calculated)

48995.5 Da

IEP (calculated)

8.205

GRAVY (calculated)

-0.724

Length

443 amino acids

Sequence
(BLAST)

001: MAASSLLTMD NSRTRQNMNG SANWSRRSSI ASLEDLEIPP KFRSFAPSSI SISPSLVSPS TCFSPSVFLD SPAFVASSAK VLASPTTGAL VTYESNQKSI
101: NEEKKTNKNN NNNVNFFDFS FQTQSSGVSA PTTTTATNSS VFQSQVCSNF KYLFTFTVCF LKFKMFFMPN THHQSERRGW LQLEKVRSET GERERESSEL
201: LKCTYPNCPT KKKVETSLEG QITETVYKGS HNHPKPQSTR RSSSSSSSSF SYDNTTSGSL GDDELTVISR GEEEDCGSEP EAKRWKGESE TNGTGNGNGS
301: KTVREPRIVV QTTSDIDILD DGYRWRKYGQ KVLLQLVVYK CTTPGCPVRK HVERASHDMR AVITTYEGKH NHDVPAARGS GYSTNRLAQD PSSAPIRPNA
401: IAGHTSYTTS SQAPYTLQML HNNNTTKEEP NDESSSFFDS FLS

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.