CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX91470
CDY07729
CDY14459
CDY18383
CDY48650
CDY65564
CDY69941

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	CDX91470	AT2G38470.1	21395886
AT3G62770.1	CDY07729	AT2G38470.1	21395886
AT3G62770.1	CDY14459	AT2G38470.1	21395886
AT3G62770.1	CDY18383	AT2G38470.1	21395886
AT3G62770.1	CDY48650	AT2G38470.1	21395886
AT3G62770.1	CDY65564	AT2G38470.1	21395886
AT3G62770.1	CDY69941	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003509.1-P	Field mustard	nucleus	99.26	96.39
CDY25117	Canola	cytosol, plastid	97.77	92.07
CDX89148	Canola	cytosol	91.83	89.4
CDX93962	Canola	cytosol	91.34	88.07
CDX76661	Canola	plastid	89.85	85.61
AT3G62770.1	Thale cress	nucleus, plastid	89.36	84.94
CDY11447	Canola	nucleus	89.85	84.03
VIT_07s0104g01790.t01	Wine grape	plastid	70.05	66.75
VIT_07s0104g01780.t01	Wine grape	plastid	72.03	66.29
KRH68154	Soybean	cytosol, plastid	66.09	63.12
KRG96415	Soybean	cytosol, plastid	64.6	61.7
CDY27213	Canola	cytosol	53.71	56.07
CDX72135	Canola	cytosol	53.47	55.81
CDX72134	Canola	cytosol	53.47	55.81
CDY06959	Canola	cytosol, plastid	53.47	52.94
CDY14745	Canola	cytosol, plastid	53.47	52.94
KRH50149	Soybean	cytosol, mitochondrion	8.66	51.47
CDY52140	Canola	cytosol	42.33	45.36
CDX80950	Canola	cytosol	41.83	44.83
CDX72248	Canola	plastid	25.99	28.61
CDY39210	Canola	cytosol, plastid	25.74	28.34

Protein Annotations

EnsemblPlants:CDX67903	EnsemblPlantsGene:GSBRNA2T00099109001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF33	ProteinID:CDX67903	ProteinID:CDX67903.1	SEG:seg	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0004EF348B	MapMan:19.3.2.1.3	:	:	:	:

Description

BnaA07g19430D

Coordinates

chrLK031787:-:2817655..2819695

Molecular Weight (calculated)

44329.6 Da

IEP (calculated)

7.544

GRAVY (calculated)

-0.227

Length

404 amino acids

Sequence
(BLAST)

001: MATVSSSPSD SDSHHRDPGD DAEPLDSFSS EDPNHNSDQI QTPSSPPATP PPSLLHLSFN QDHACFAVGT SRGFRILNCD PFREIFRRDF DRGGGVAVVE
101: MLFRCNILAI VGGGPDPQYP PSKVMIWDDH QSRCIGELSF RSDVRSVRLR RDRIVVVLEQ KIFVYNFVDL KLMHQIETIA NPKGLCAVSQ GGGGSMVLVC
201: PGLQKGQVRI EHYASKRTKF VMAHDSRIAC FALTQDGGLL ATASSKGTLV RVFNTVDGTL RQEVRRGADR AEIYSLAFSS SAEWLAVSSD KGTVHVFGLK
301: VNSGSQVKDT PRIAAELTRS SSSPSSSLSL FKGVLPKYFS SEWSVAQFRL VEGTQYIVAF GHQKNTVVIL GMDGSFYRCQ FDPVNGGEMS QLEYHNCLKP
401: PSVF

Best Arabidopsis Sequence Match ( AT2G40810.1 )
(BLAST)

001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP

Arabidopsis Description

ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.