Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- nucleus 1
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra016968.1-P | Field mustard | cytosol, plastid | 98.28 | 98.28 |
CDY14745 | Canola | cytosol, plastid | 97.79 | 97.79 |
AT2G40810.1 | Thale cress | cytosol | 86.27 | 89.57 |
CDY27213 | Canola | cytosol | 77.94 | 82.17 |
CDX72134 | Canola | cytosol | 77.7 | 81.91 |
CDX72135 | Canola | cytosol | 77.7 | 81.91 |
KRH53692 | Soybean | plastid | 71.81 | 69.76 |
Solyc06g048510.2.1 | Tomato | cytosol | 70.83 | 69.47 |
KRH64240 | Soybean | cytosol, plastid | 71.08 | 69.21 |
VIT_13s0067g00170.t01 | Wine grape | cytosol, plastid | 68.87 | 68.54 |
GSMUA_Achr10P... | Banana | cytosol, plastid | 68.14 | 66.51 |
OQU86240 | Sorghum | cytosol | 66.91 | 65.0 |
Zm00001d039703_P001 | Maize | cytosol | 66.42 | 64.99 |
TraesCS3D01G095500.1 | Wheat | cytosol | 65.44 | 64.03 |
TraesCS3B01G110900.1 | Wheat | cytosol | 65.44 | 64.03 |
TraesCS3A01G095300.1 | Wheat | cytosol | 65.2 | 63.79 |
HORVU3Hr1G017150.1 | Barley | cytosol | 65.2 | 63.79 |
Os01t0168500-01 | Rice | cytosol | 64.71 | 63.31 |
Zm00001d008691_P001 | Maize | cytosol | 65.93 | 61.84 |
TraesCS1D01G114300.1 | Wheat | cytosol | 55.64 | 58.96 |
TraesCS1B01G132900.1 | Wheat | cytosol | 55.39 | 58.7 |
TraesCS1A01G112700.1 | Wheat | cytosol | 55.15 | 58.44 |
GSMUA_AchrUn_... | Banana | cytosol, plastid | 58.33 | 56.26 |
Os05t0169200-01 | Rice | cytosol | 51.96 | 55.5 |
CDX67903 | Canola | nucleus | 52.94 | 53.47 |
CDX89148 | Canola | cytosol | 53.43 | 52.53 |
CDY11447 | Canola | nucleus | 55.39 | 52.31 |
HORVU3Hr1G017140.1 | Barley | extracellular, plasma membrane | 8.82 | 52.17 |
CDX93962 | Canola | cytosol | 53.43 | 52.03 |
CDX76661 | Canola | plastid | 53.43 | 51.42 |
CDY25117 | Canola | cytosol, plastid | 53.43 | 50.82 |
CDY52140 | Canola | cytosol | 46.32 | 50.13 |
CDX80950 | Canola | cytosol | 45.59 | 49.34 |
KXG21420 | Sorghum | peroxisome | 44.85 | 45.86 |
CDX72248 | Canola | plastid | 23.77 | 26.43 |
CDY39210 | Canola | cytosol, plastid | 23.53 | 26.16 |
Protein Annotations
EnsemblPlants:CDY06959 | EnsemblPlantsGene:GSBRNA2T00123263001 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR001680 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf | PANTHER:PTHR11227 |
PANTHER:PTHR11227:SF45 | ProteinID:CDY06959 | ProteinID:CDY06959.1 | SEG:seg | SMART:SM00320 | SUPFAM:SSF50978 |
UniParc:UPI0004EDE3A7 | MapMan:19.3.2.1.3 | : | : | : | : |
Description
BnaA04g23560D
Coordinates
chrLK031974:-:380303..382915
Molecular Weight (calculated)
45123.3 Da
IEP (calculated)
6.580
GRAVY (calculated)
-0.158
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTASSPQR VLQPGGYNGN DSRSSSTSSS FLRPELESTE TEEAELVSVS WNQDSSCFAA GTSHGFRIYN CEPFKETFRR DLKNGGFKIV EMLFRSNILA
101: LVGGGPNSQY PSTKVLIWDD HQSRCISEFS FRSEIRAVKL SRDWIVVVLE HKIYVYSFVD LRLLLQIETY ANPRGLCCLS HDSDTSVLAC PGLLRGEIRV
201: EHFGLNMVQT INAHDASIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVVGEDSQS
301: SENAALLTQG TYSNSLQGLV SPPTGTNPGS SLSFMRGVLP KYFSSEWSFA QFHVSEVTQF FAAFGSHNTV AITGMDGSFY RCSFDPVNGG EMVQLEHIHF
401: LKTDNRPR
101: LVGGGPNSQY PSTKVLIWDD HQSRCISEFS FRSEIRAVKL SRDWIVVVLE HKIYVYSFVD LRLLLQIETY ANPRGLCCLS HDSDTSVLAC PGLLRGEIRV
201: EHFGLNMVQT INAHDASIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVVGEDSQS
301: SENAALLTQG TYSNSLQGLV SPPTGTNPGS SLSFMRGVLP KYFSSEWSFA QFHVSEVTQF FAAFGSHNTV AITGMDGSFY RCSFDPVNGG EMVQLEHIHF
401: LKTDNRPR
001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
Arabidopsis Description
ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.