Factsheet for TraesCS3D01G095500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G110900.1	Wheat	cytosol	99.52	99.52
HORVU3Hr1G017150.1	Barley	cytosol	99.52	99.52
TraesCS3A01G095300.1	Wheat	cytosol	99.04	99.04
Os01t0168500-01	Rice	cytosol	89.21	89.21
OQU86240	Sorghum	cytosol	87.77	87.14
Zm00001d039703_P001	Maize	cytosol	87.05	87.05
Zm00001d008691_P001	Maize	cytosol	83.93	80.46
GSMUA_Achr10P...	Banana	cytosol, plastid	74.1	73.92
KRH64240	Soybean	cytosol, plastid	71.7	71.36
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	11.75	71.01
KRH53692	Soybean	plastid	70.74	70.24
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	68.59	69.76
CDY27213	Canola	cytosol	64.27	69.25
AT3G56440.1	Thale cress	cytosol	64.75	69.05
CDX72135	Canola	cytosol	64.03	68.99
CDX72134	Canola	cytosol	64.03	68.99
AT2G40810.1	Thale cress	cytosol	64.75	68.7
Solyc06g048510.2.1	Tomato	cytosol	68.35	68.51
Bra016968.1-P	Field mustard	cytosol, plastid	64.75	66.18
TraesCS1D01G114300.1	Wheat	cytosol	60.43	65.45
CDY14745	Canola	cytosol, plastid	64.03	65.44
CDY06959	Canola	cytosol, plastid	64.03	65.44
GSMUA_AchrUn_...	Banana	cytosol, plastid	60.19	59.34
TraesCS2D01G119500.1	Wheat	plastid	33.33	36.39
TraesCS2D01G116100.1	Wheat	cytosol	33.09	34.94
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	24.46	27.35

Protein Annotations

EnsemblPlants:TraesCS3D01G095500.1	EnsemblPlantsGene:TraesCS3D01G095500	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF45	PFAM:PF00400	SMART:SM00320	SUPFAM:SSF50978	MapMan:19.3.2.1.3	:

Description

No Description!

Coordinates

chr3D:-:48442477..48444831

Molecular Weight (calculated)

46398.7 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.200

Length

417 amino acids

Sequence
(BLAST)

001: MSSQVSTSRG LHPPEKIMTY ESPHTWPLSV PTSKAEAGSS DDQEVRLLSV SWNQDCGCFA AGTSNGFRIF NCDPFKETFR RDLKSGGFGI VEMLFRCNIL
101: ALVGGGSNMH YPPNKVMIWD DHQSRCIGEF TFRSDVRAVK LGKDNIVIVL ETKIYVYNFT DLKMLHQIET LPNPKGLCCL SHHSNTSVLA CPGLSQGHVR
201: VEHFGLKVTK MITAHDSHIS CMALTMDGLL LATASMKGTL IRIFNTMDGT RLQEVRRGLD KAEIYSIALS PNVQWLAVSS DKGTVHIFSL KVRVAGEDSS
301: NDQRTLEAPR MDHQNSSTSM DPLIQTNTGS NASSSLSFMK GILPKYFSSE WSFAQFHLPE VTRYIVAFGA QNTVMMVGLD GSFYRCIFDQ VNGGQMTQKE
401: YSRFLKTDYP PLRTLTA

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.