Factsheet for TraesCS6D01G335900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	99.46	99.46
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	99.2	99.2
HORVU6Hr1G084430.3	Barley	cytosol	99.2	82.96
KXG31257	Sorghum	cytosol	76.68	77.09
Zm00001d018355_P005	Maize	cytosol, plastid	76.41	76.82
Os02t0791800-01	Rice	cytosol	75.07	74.87
VIT_11s0037g00970.t01	Wine grape	cytosol	43.43	61.6
GSMUA_Achr9P13430_001	Banana	plastid	59.25	60.05
VIT_03s0091g00190.t01	Wine grape	plastid	14.75	58.51
KRH72365	Soybean	cytosol	54.96	55.71
KRH02984	Soybean	cytosol	54.69	55.28
KRH07770	Soybean	plastid	30.56	54.55
Bra024070.1-P	Field mustard	plastid	52.55	53.55
AT4G30510.1	Thale cress	cytosol	52.55	53.55
CDY39210	Canola	cytosol, plastid	52.55	53.41
Solyc07g006120.2.1	Tomato	cytosol	52.01	53.15
CDX72248	Canola	plastid	52.28	53.13
PGSC0003DMT400028996	Potato	cytosol	51.74	52.88
KRH33489	Soybean	cytosol	19.84	50.68
TraesCS3D01G095500.1	Wheat	cytosol	27.35	24.46
TraesCS1D01G114300.1	Wheat	cytosol	24.13	23.38
TraesCS2D01G119500.1	Wheat	plastid	19.3	18.85
TraesCS2D01G116100.1	Wheat	cytosol	19.57	18.48

Protein Annotations

EnsemblPlants:TraesCS6D01G335900.1	EnsemblPlantsGene:TraesCS6D01G335900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SMART:SM00320	SUPFAM:SSF50978
MapMan:19.3.2.1.3	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:436887251..436890995

Molecular Weight (calculated)

41027.7 Da

IEP (calculated)

8.387

GRAVY (calculated)

-0.170

Length

373 amino acids

Sequence
(BLAST)

001: MASGSSRPQI LCVSFNQDNS MFSVGTKEGF KIFDARTGRL CNDNKLGGLN VVELWFATNL IAMVGTGEQP SRSPRRLCLF NTITGASKKD LNFRSTILAV
101: RFSRTRLIVV LQDKTFIYDL NSTRILEEID TVHNPKGLCA FAPNSEWCYL AIPASTSKGS ALVYKASEPE LICQIDAHES PLAAMAFSSN GMYLATASEK
201: GTMIRVYIVA QATKSHSFRR GAYPSTIYSL SFGPCIDRPD VLAATSSSGS LHMFFLDAAR NGRNQTNKLL GSIIPGSKAI SDALDPANHH VIHNIAPAET
301: KSCLAVHSVE YSQNSSKFPA VRTVVYVVTH DGYFREYTIG TTKSNESSWV LEREFSLLDT GYTQKQNEHH HVD

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.