Factsheet for TraesCS1D01G114300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G132900.1	Wheat	cytosol	98.44	98.44
TraesCS1A01G112700.1	Wheat	cytosol	98.18	98.18
Os05t0169200-01	Rice	cytosol	63.12	63.61
TraesCS3D01G095500.1	Wheat	cytosol	65.45	60.43
CDY27213	Canola	cytosol	58.96	58.66
CDX72134	Canola	cytosol	58.7	58.4
CDX72135	Canola	cytosol	58.7	58.4
AT3G56440.1	Thale cress	cytosol	59.22	58.31
AT2G40810.1	Thale cress	cytosol	58.44	57.25
GSMUA_Achr10P...	Banana	cytosol, plastid	60.78	55.98
Bra016968.1-P	Field mustard	cytosol, plastid	59.22	55.88
Solyc06g048510.2.1	Tomato	cytosol	60.26	55.77
CDY06959	Canola	cytosol, plastid	58.96	55.64
CDY14745	Canola	cytosol, plastid	58.7	55.39
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	58.44	54.88
KRH64240	Soybean	cytosol, plastid	58.18	53.46
KRH53692	Soybean	plastid	58.18	53.33
KXG21420	Sorghum	peroxisome	50.39	48.62
GSMUA_AchrUn_...	Banana	cytosol, plastid	50.65	46.1
TraesCS2D01G119500.1	Wheat	plastid	33.77	34.03
TraesCS2D01G116100.1	Wheat	cytosol	33.77	32.91
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	23.38	24.13

Protein Annotations

EnsemblPlants:TraesCS1D01G114300.1	EnsemblPlantsGene:TraesCS1D01G114300	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF45	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	MapMan:19.3.2.1.3	:

Description

No Description!

Coordinates

chr1D:+:110497017..110499762

Molecular Weight (calculated)

42843.3 Da

IEP (calculated)

8.474

GRAVY (calculated)

-0.172

Length

385 amino acids

Sequence
(BLAST)

001: MTSQVSPSQG AGGSDVEDED VDLFSVNWNQ DHSCFSAATA NGLRMFSCKP FKEQLRRIQE DGGFRIVEML FRTNIFGLVG QGADKQYQQN KLTIWDDCHN
101: LLIGDFSFKS NIRAVKLSKD YFVVALEHEI YVYSFKTLKL IHLIDTTSNP KGLCCLSHHA DISVMACPGM RQGIVRVEHF GSKETKFITA HDSNISCMTL
201: TVDGLLLATA SVRGTLIRIF NTMDGACLQE VRRGVDKAEI YSIALSPNLQ WLAVSSDKGT MHIFSLRVRP RGKDASNGKS AIAGRQMDRS YSSGSVGSNA
301: SSSLSFMKGI LPKYFSSEWS FAQFRLPEVT RYITAFGDQT TVMMIGLDGS FYRCSFDPVN GGKMVLDEFI RFMKPSMSRS RTPNT

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.