CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72135	Canola	cytosol	100.0	100.0
CDY27213	Canola	cytosol	99.22	99.22
AT3G56440.1	Thale cress	cytosol	87.08	86.19
CDY06959	Canola	cytosol, plastid	81.91	77.7
CDY14745	Canola	cytosol, plastid	81.91	77.7
Solyc06g048510.2.1	Tomato	cytosol	73.64	68.51
VIT_13s0067g00170.t01	Wine grape	cytosol, plastid	71.58	67.56
KRH64240	Soybean	cytosol, plastid	73.13	67.54
GSMUA_Achr10P...	Banana	cytosol, plastid	72.35	66.99
KRH53692	Soybean	plastid	72.61	66.9
OQU86240	Sorghum	cytosol	70.28	64.76
Zm00001d039703_P001	Maize	cytosol	69.77	64.75
TraesCS3B01G110900.1	Wheat	cytosol	68.99	64.03
TraesCS3D01G095500.1	Wheat	cytosol	68.99	64.03
TraesCS3A01G095300.1	Wheat	cytosol	68.73	63.79
HORVU3Hr1G017150.1	Barley	cytosol	68.73	63.79
Os01t0168500-01	Rice	cytosol	68.73	63.79
Zm00001d008691_P001	Maize	cytosol	68.22	60.69
TraesCS1D01G114300.1	Wheat	cytosol	58.4	58.7
TraesCS1B01G132900.1	Wheat	cytosol	58.14	58.44
TraesCS1A01G112700.1	Wheat	cytosol	57.88	58.18
GSMUA_AchrUn_...	Banana	cytosol, plastid	61.5	56.26
Os05t0169200-01	Rice	cytosol	55.04	55.76
HORVU3Hr1G017140.1	Barley	extracellular, plasma membrane	9.56	53.62
CDX67903	Canola	nucleus	55.81	53.47
CDX89148	Canola	cytosol	56.07	52.29
CDX93962	Canola	cytosol	56.07	51.79
CDY25117	Canola	cytosol, plastid	56.59	51.05
CDX76661	Canola	plastid	55.56	50.71
CDY11447	Canola	nucleus	56.33	50.46
CDY52140	Canola	cytosol	48.06	49.34
CDX80950	Canola	cytosol	47.29	48.54
KXG21420	Sorghum	peroxisome	47.29	45.86
CDX72248	Canola	plastid	24.81	26.16
CDY39210	Canola	cytosol, plastid	24.55	25.89

Protein Annotations

EnsemblPlants:CDX72134	EnsemblPlantsGene:GSBRNA2T00155953001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF45	ProteinID:CDX72134	ProteinID:CDX72134.1	SEG:seg	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0004EF0A06	MapMan:19.3.2.1.3	:	:	:	:

Description

BnaC08g27400D

Coordinates

chrLK031795:+:2604083..2606156

Molecular Weight (calculated)

43242.6 Da

IEP (calculated)

7.823

GRAVY (calculated)

-0.156

Length

387 amino acids

Sequence
(BLAST)

001: MTSTLYNSQG ILHPRGFRSP EPGFGDSDGA ELVSVSWNQD YSCFSSGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSNK
101: VLIWDDHQSR CISEFSFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIENLANPR GLCCLSHHMN TSVLACPGVR RGEVRVEHFG LNMVQIINAH
201: DANIACMTMT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGTDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVS GEDSHSTEHE TSSNSLQALV
301: TPASGVNPGS SLSFLRGVLP RYFSSEWSFA QFHVPEVTQF FAAFGAQNTI AIIGMDGSFY RCSFDPVNGG EMTQLEYVRF LKPGTLK

Best Arabidopsis Sequence Match ( AT3G56440.1 )
(BLAST)

001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R

Arabidopsis Description

ATG18DAutophagy-related protein 18d [Source:UniProtKB/Swiss-Prot;Acc:Q0WPK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.