CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX91470
CDY07729
CDY14459
CDY18383
CDY48650
CDY65564
CDY69941

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	CDX91470	AT2G38470.1	21395886
AT3G62770.1	CDY07729	AT2G38470.1	21395886
AT3G62770.1	CDY14459	AT2G38470.1	21395886
AT3G62770.1	CDY18383	AT2G38470.1	21395886
AT3G62770.1	CDY48650	AT2G38470.1	21395886
AT3G62770.1	CDY65564	AT2G38470.1	21395886
AT3G62770.1	CDY69941	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67903	Canola	nucleus	92.07	97.77
CDX89148	Canola	cytosol	89.51	92.53
CDX93962	Canola	cytosol	89.51	91.65
CDX76661	Canola	plastid	89.28	90.33
AT3G62770.1	Thale cress	nucleus, plastid	88.11	88.94
CDY11447	Canola	nucleus	88.58	87.96
VIT_07s0104g01790.t01	Wine grape	plastid	68.53	69.34
VIT_07s0104g01780.t01	Wine grape	plastid	69.7	68.11
KRH68154	Soybean	cytosol, plastid	64.8	65.72
KRG96415	Soybean	cytosol, plastid	63.87	64.78
CDY27213	Canola	cytosol	51.28	56.85
CDX72135	Canola	cytosol	51.05	56.59
CDX72134	Canola	cytosol	51.05	56.59
CDY06959	Canola	cytosol, plastid	50.82	53.43
CDY14745	Canola	cytosol, plastid	50.82	53.43
KRH50149	Soybean	cytosol, mitochondrion	8.16	51.47
CDY52140	Canola	cytosol	40.33	45.89
CDX80950	Canola	cytosol	39.86	45.36
CDX72248	Canola	plastid	24.48	28.61
CDY39210	Canola	cytosol, plastid	24.24	28.34

Protein Annotations

EnsemblPlants:CDY25117	EnsemblPlantsGene:GSBRNA2T00028991001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF33	PFAM:PF00400	ProteinID:CDY25117	ProteinID:CDY25117.1	SEG:seg	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EF2463	UniProt:A0A078GIW1	MapMan:19.3.2.1.3	:	:

Description

BnaC06g18590DBnaC06g18590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIW1]

Coordinates

chrLK032168:-:551284..553421

Molecular Weight (calculated)

47010.6 Da

IEP (calculated)

7.562

GRAVY (calculated)

-0.288

Length

429 amino acids

Sequence
(BLAST)

001: MATVSSSSPS SPWPNPNPDS TSPSDSHSHH RDRGDDAEPL DSFSSMTLNS EDPNHNPDPI QTPSSPPAPD SPATPPPSLL HLSFNQDHAC FAVGTSRGFR
101: ILNCDPFREI FRRDFDRGGG VAVVEMLFRC NILALVGGGP DPQYPPSKVM IWDDHQSRCI GELSFRSDVR SVRLRRDRIV VVLEQKIFVY NFVDLKLMHQ
201: IETIANPKGL CAVSQGAGGS MVLVCPGLQK GQVRIEHYAS KRTKFVMAHD SRIACFALTQ DGGLLATASS KGTLVRVFNT VDGTLRQEVR RGADRAEIYS
301: LAFSSNAEWL AVSSDKGTVH VFGLKVNSGS QVKETPRIAA ELTRSSSSPS SSLSLFKGVL PKYFSSEWSV AQFRLVEGTQ YIVAFGHQKN TVVILGMDGS
401: FYRCQFDPVN GGEMSQLEYH NCLKPPSVF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.