CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67903
CDX74352
CDX75979
CDX76661
CDX82333
CDX89148
CDX91889
CDX92261
CDX93962
CDX99326
CDY11447
CDY25117
CDY68488
CDY71738

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	CDX75979	AT3G18690.1	15990873
AT2G38470.1	CDX82333	AT3G18690.1	15990873
AT2G38470.1	CDX92261	AT3G18690.1	15990873
AT2G38470.1	CDX99326	AT3G18690.1	15990873
AT2G38470.1	CDY68488	AT3G18690.1	15990873
AT2G38470.1	CDY71738	AT3G18690.1	15990873
AT2G38470.1	CDX75979	AT3G18690.1	18650934
AT2G38470.1	CDX82333	AT3G18690.1	18650934
AT2G38470.1	CDX92261	AT3G18690.1	18650934
AT2G38470.1	CDX99326	AT3G18690.1	18650934
AT2G38470.1	CDY68488	AT3G18690.1	18650934
AT2G38470.1	CDY71738	AT3G18690.1	18650934
AT2G38470.1	CDX75979	AT3G18690.1	21203436
AT2G38470.1	CDX82333	AT3G18690.1	21203436
AT2G38470.1	CDX92261	AT3G18690.1	21203436
AT2G38470.1	CDX99326	AT3G18690.1	21203436
AT2G38470.1	CDY68488	AT3G18690.1	21203436
AT2G38470.1	CDY71738	AT3G18690.1	21203436
AT2G38470.1	CDX67903	AT3G62770.1	21395886
AT2G38470.1	CDX76661	AT3G62770.1	21395886
AT2G38470.1	CDX89148	AT3G62770.1	21395886
AT2G38470.1	CDX93962	AT3G62770.1	21395886
AT2G38470.1	CDY11447	AT3G62770.1	21395886
AT2G38470.1	CDY25117	AT3G62770.1	21395886
AT2G38470.1	CDX74352	AT4G01370.1	18650934
AT2G38470.1	CDX91889	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18383	Canola	nucleus, plastid	97.06	96.26
Bra017117.1-P	Field mustard	nucleus	92.87	95.68
CDX91470	Canola	nucleus, plastid	85.74	85.92
CDY65564	Canola	nucleus, plastid	84.7	85.77
CDY14459	Canola	nucleus, plastid	81.97	79.8
CDY07729	Canola	nucleus	79.04	79.7
AT2G38470.1	Thale cress	nucleus, plastid	82.81	76.11
CDY48650	Canola	nucleus, plastid	70.23	75.62
CDY05016	Canola	nucleus	32.08	47.96
CDY14055	Canola	nucleus	31.03	46.4
CDX97834	Canola	nucleus	34.17	45.15
CDY29685	Canola	nucleus	33.12	45.14
GSMUA_Achr3P09940_001	Banana	nucleus	34.59	45.08
CDY10720	Canola	nucleus	35.01	44.77
Solyc09g014990.2.1	Tomato	nucleus	48.85	44.05
CDX84848	Canola	nucleus	34.59	43.65
GSMUA_Achr11P...	Banana	nucleus	42.56	43.56
KRH17125	Soybean	nucleus	52.2	43.3
KRH72765	Soybean	nucleus	52.62	43.28
CDY24017	Canola	nucleus	34.17	43.12
GSMUA_Achr6P32720_001	Banana	nucleus	39.41	41.23
KRG98195	Soybean	nucleus	46.75	41.14
VIT_08s0058g00690.t01	Wine grape	nucleus	47.59	41.12
KRH30155	Soybean	nucleus	46.54	40.51
PGSC0003DMT400030388	Potato	nucleus	34.59	40.44
CDY02051	Canola	nucleus	23.48	40.43
Zm00001d043025_P001	Maize	nucleus	46.12	39.64
KXG33637	Sorghum	nucleus	45.91	39.39
TraesCS1A01G298600.1	Wheat	nucleus, plastid	41.51	39.21
Os01t0826400-01	Rice	extracellular	45.49	39.1
TraesCS1D01G292700.1	Wheat	nucleus, plastid	41.3	38.86
HORVU1Hr1G070250.2	Barley	nucleus, plastid	41.51	38.67
TraesCS3A01G347500.1	Wheat	nucleus	45.49	38.61
TraesCS1B01G308200.1	Wheat	nucleus, plastid	41.09	38.51
TraesCS3D01G341100.1	Wheat	nucleus	45.28	38.5
TraesCS3B01G379200.1	Wheat	nucleus	45.07	38.46
Os05t0474800-01	Rice	nucleus	43.82	36.54
HORVU3Hr1G088200.4	Barley	nucleus, plastid	45.49	36.23
Zm00001d038451_P001	Maize	nucleus	41.72	35.73
Zm00001d012482_P001	Maize	nucleus	44.23	35.58
CDX98138	Canola	nucleus	33.75	35.23
CDY36419	Canola	nucleus	33.54	35.16
CDY33788	Canola	nucleus	32.08	34.62
GSMUA_Achr8P01790_001	Banana	nucleus	41.3	34.56
CDY53941	Canola	nucleus	31.45	34.09
CDX96873	Canola	nucleus	32.49	33.26
CDY62213	Canola	nucleus	32.29	33.19
CDY16122	Canola	nucleus	30.61	32.59
OQU78174	Sorghum	nucleus	42.98	31.59
CDY03003	Canola	nucleus	32.29	31.49
CDX74281	Canola	nucleus	29.77	31.49
CDY45169	Canola	nucleus	32.08	31.48
CDY70490	Canola	nucleus	33.75	31.08
CDY42736	Canola	nucleus	33.54	30.25
CDY37191	Canola	nucleus	30.61	30.04
CDY69527	Canola	nucleus	33.96	29.83
CDX97359	Canola	nucleus	33.33	29.61
CDX89336	Canola	nucleus	33.12	29.59
CDX89317	Canola	nucleus	33.12	29.59
CDX94335	Canola	nucleus	31.87	29.57
CDX94303	Canola	nucleus	32.91	29.51
CDX92808	Canola	nucleus	32.08	29.2
CDY46692	Canola	nucleus	32.08	29.14
CDY11947	Canola	nucleus	34.59	28.75
CDX91348	Canola	nucleus	24.11	28.61
CDY14304	Canola	nucleus	32.7	28.52
CDX74976	Canola	nucleus	23.69	28.39
CDY72350	Canola	nucleus	8.6	28.28
CDY36788	Canola	nucleus	36.48	27.88
CDX93073	Canola	nucleus	21.38	27.72
CDY49388	Canola	nucleus	37.53	26.68
CDY50038	Canola	nucleus	23.9	26.15
CDY36463	Canola	nucleus	19.71	23.56
CDY62292	Canola	nucleus	10.27	23.56
CDY32799	Canola	nucleus	28.93	22.96
CDY62293	Canola	nucleus	9.64	22.66
CDX79729	Canola	nucleus	14.88	22.05
CDY46769	Canola	nucleus	14.88	21.98
CDY46768	Canola	nucleus	14.88	21.98
CDY47543	Canola	nucleus	12.79	21.55
CDY23265	Canola	nucleus	20.55	21.44
CDY26094	Canola	nucleus	18.66	21.39
CDY08253	Canola	nucleus	18.66	21.39
CDY47546	Canola	nucleus	16.56	20.1
CDY13396	Canola	nucleus	20.96	18.83
CDY59057	Canola	nucleus	17.19	18.34
CDY10548	Canola	nucleus	16.56	18.33
CDY67588	Canola	nucleus	16.35	15.12
CDY54360	Canola	nucleus	17.19	14.75
CDX72277	Canola	nucleus	21.17	13.78
CDY52777	Canola	nucleus, plastid	3.35	9.36

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	GO:A0A078JWQ8	UniProt:A0A078JWQ8	EnsemblPlants:CDY69941
ProteinID:CDY69941	ProteinID:CDY69941.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00093668001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0004EAFA9F	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

BnaCnng66020DBnaCnng66020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWQ8]

Coordinates

chrLK040733:+:121..2064

Molecular Weight (calculated)

52419.6 Da

IEP (calculated)

7.211

GRAVY (calculated)

-0.945

Length

477 amino acids

Sequence
(BLAST)

001: MAASSLLTMD NNRTRQNMNG SVNWSQQTSR ASPASLEDLE IPPKFRSFAP SSISTSPSTC FSPSVFLDSP AFVSSSANVL ASPTTGALIT NESDHKSITE
101: EEKTNNNNNS LSLFDFSFQT QPSGVSAPTT TTNSSVLQWS QTDTRPNNNT HQAVPYNGRE QRKGEDGYNW RKYGQKQVKG SENPRSYYKC TYPSCPTKKK
201: VEMSLDGQIT EIVYKGSHNH PKPQSTRRSS SSFSTFHSGG LDHHGSSDSF AIQQEDNATS GSLGDDELSV ISREEEDYGS EPEAKRWKGE NETNGGSGNG
301: SKTVREPRIV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTTTG CPVRKHVERA SHDMRAVITT YEGKHNHDVP AARGSGYSTN RLAQDPSSAP
401: IRPNAIAGHS HYTTSSQAPY TLQMLQHNNN TNAGPFGYAM NNNIQTQQNN FVGGGFSIAK EEPNEESSSS FFDSFLS

Best Arabidopsis Sequence Match ( AT5G07100.2 )
(BLAST)

001: MVTQPLPQLD LFKSEIMSSN KTSDDGYNWR KYGQKQVKGS ENPRSYFKCT YPNCLTKKKV ETSLVKGQMI EIVYKGSHNH PKPQSTKRSS STAIAAHQNS
101: SNGDGKDIGE DETEAKRWKR EENVKEPRVV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTFTG CFVRKHVERA FQDPKSVITT YEGKHKHQIP
201: TPRRGPVLRL LGKTET

Arabidopsis Description

WRKY26Probable WRKY transcription factor 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5T3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.