CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX91470
CDY07729
CDY14459
CDY18383
CDY48650
CDY65564
CDY69941

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	CDX91470	AT2G38470.1	21395886
AT3G62770.1	CDY07729	AT2G38470.1	21395886
AT3G62770.1	CDY14459	AT2G38470.1	21395886
AT3G62770.1	CDY18383	AT2G38470.1	21395886
AT3G62770.1	CDY48650	AT2G38470.1	21395886
AT3G62770.1	CDY65564	AT2G38470.1	21395886
AT3G62770.1	CDY69941	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11447	Canola	nucleus	94.34	92.59
CDX89148	Canola	cytosol	89.15	91.08
CDX67903	Canola	nucleus	85.61	89.85
CDX93962	Canola	cytosol	88.68	89.74
CDY25117	Canola	cytosol, plastid	90.33	89.28
AT3G62770.1	Thale cress	nucleus, plastid	87.5	87.29
VIT_07s0104g01790.t01	Wine grape	plastid	68.63	68.63
VIT_07s0104g01780.t01	Wine grape	plastid	69.58	67.2
KRH68154	Soybean	cytosol, plastid	65.57	65.72
KRG96415	Soybean	cytosol, plastid	64.39	64.54
CDY27213	Canola	cytosol	50.94	55.81
CDX72135	Canola	cytosol	50.71	55.56
CDX72134	Canola	cytosol	50.71	55.56
CDY06959	Canola	cytosol, plastid	51.42	53.43
CDY14745	Canola	cytosol, plastid	51.42	53.43
KRH50149	Soybean	cytosol, mitochondrion	8.49	52.94
CDY52140	Canola	cytosol	41.98	47.21
CDX80950	Canola	cytosol	41.51	46.68
CDX72248	Canola	plastid	23.82	27.52
CDY39210	Canola	cytosol, plastid	23.58	27.25

Protein Annotations

EnsemblPlants:CDX76661	EnsemblPlantsGene:GSBRNA2T00127134001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF33	PFAM:PF00400	ProteinID:CDX76661	ProteinID:CDX76661.1	SEG:seg	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EDBCAA	MapMan:19.3.2.1.3	:	:	:

Description

BnaC08g32470D

Coordinates

chrLK031808:-:386121..387837

Molecular Weight (calculated)

46835.7 Da

IEP (calculated)

7.742

GRAVY (calculated)

-0.215

Length

424 amino acids

Sequence
(BLAST)

001: MTTVSTPSPP WLNPDSTPAS DSASTCPSHH RDRGDDAESL DSFSSMTLNS EEFNLNPNPN LNIQTHTTSP SATTPPPSLL HLSFNQDHAC FAVGTDRGFL
101: ILNCDPFREI FRRDFDRGVA VVEMLFRCNI LALVGGGPDP QYPPNKVMIW DDHQGRCIGE LSFRSDVRSV RLRRDRIVVV LEQKIFVYNF VDLKLMHQIE
201: TFANPKGLCA VSQGAGSMVL VCPGLQKGQV RIEHYASKRT KFVMAHDSRI ACFALTQDGS LLATASSKGT LVRIFNTVDG TLRQEVRRGA DRAEIYSLAF
301: SSNAEWLAVS SDKGTVHVFG LKVNSGVKDT PTRIASNVTR PTSPSSSLSL FKGVLPKYFS SEWSVAQFRL VEGTQYIVAF GHQKNTVVIL GMDGSFYRCQ
401: FDPVNGGEMS QLEYHNCLKP PSVF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.