CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX91470
CDY07729
CDY14459
CDY18383
CDY48650
CDY65564
CDY69941

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	CDX91470	AT2G38470.1	21395886
AT3G62770.1	CDY07729	AT2G38470.1	21395886
AT3G62770.1	CDY14459	AT2G38470.1	21395886
AT3G62770.1	CDY18383	AT2G38470.1	21395886
AT3G62770.1	CDY48650	AT2G38470.1	21395886
AT3G62770.1	CDY65564	AT2G38470.1	21395886
AT3G62770.1	CDY69941	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007700.1-P	Field mustard	nucleus, plastid	98.15	98.6
CDX76661	Canola	plastid	92.59	94.34
CDX67903	Canola	nucleus	84.03	89.85
CDX89148	Canola	cytosol	86.11	89.64
CDX93962	Canola	cytosol	86.11	88.78
CDY25117	Canola	cytosol, plastid	87.96	88.58
AT3G62770.1	Thale cress	nucleus, plastid	84.95	86.35
VIT_07s0104g01790.t01	Wine grape	plastid	66.44	67.69
VIT_07s0104g01780.t01	Wine grape	plastid	68.52	67.43
KRH68154	Soybean	cytosol, plastid	63.66	65.01
KRG96415	Soybean	cytosol, plastid	62.73	64.07
CDY27213	Canola	cytosol	50.93	56.85
CDX72135	Canola	cytosol	50.46	56.33
CDX72134	Canola	cytosol	50.46	56.33
CDY06959	Canola	cytosol, plastid	52.31	55.39
CDY14745	Canola	cytosol, plastid	52.31	55.39
KRH50149	Soybean	cytosol, mitochondrion	8.33	52.94
CDY52140	Canola	cytosol	40.74	46.68
CDX80950	Canola	cytosol	40.28	46.15
CDX72248	Canola	plastid	23.38	27.52
CDY39210	Canola	cytosol, plastid	23.15	27.25

Protein Annotations

EnsemblPlants:CDY11447	EnsemblPlantsGene:GSBRNA2T00049515001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF33	PFAM:PF00400	ProteinID:CDY11447	ProteinID:CDY11447.1	SEG:seg	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EE962D	UniProt:A0A078FEL9	MapMan:19.3.2.1.3	:	:

Description

BnaA09g40130DBnaA09g40130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEL9]

Coordinates

chrLK032011:-:408922..410775

Molecular Weight (calculated)

47806.6 Da

IEP (calculated)

7.775

GRAVY (calculated)

-0.256

Length

432 amino acids

Sequence
(BLAST)

001: MTTVSSPSSP WQNPDSTPAS DSDPTSPPHH RDRGDDAESL DSFSSMTLNA EDFNLPDRIP DSNRYLNTQT HTSPLESNSP TTTPPPSLLH LSFNQDHACF
101: AVGTARGFLI LNCDPFREIF RRDFARGVAV VEMLFRCNIL ALVGGGPDPQ YPPNKVMIWD DHQSRCIGEL SFRSEVRSVR LRRDRIVVVL EQKIFVYNFV
201: DLKLMHQIET FANPKGLCAV SQGAGSMVLV CPGLQKGQVR IEHYASKRTK FVLAHDSRIA CFALTQDGSL LATASSKGTL VRIFNTVDGT LRQEVRRGAD
301: RAEIYSLAFS SNAEWLAVSS DKGTVHVFGL KVNSGVKDTP RIASNVTRPT SPSSSLSLFK GVLPKYFSSE WSVAQFRLVE GTQYIVAFGH QKNTVVILGM
401: DGSFYRCQFD PVNGGEMSQL EYHNCLKSPS VF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.