Factsheet for Bra007700.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000064.1-P
Bra005104.1-P
Bra017117.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	Bra000064.1-P	AT2G38470.1	21395886
AT3G62770.1	Bra005104.1-P	AT2G38470.1	21395886
AT3G62770.1	Bra017117.1-P	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11447	Canola	nucleus	98.6	98.15
Bra014393.1-P	Field mustard	cytosol	84.65	89.0
Bra003509.1-P	Field mustard	nucleus	85.35	88.22
AT3G62770.1	Thale cress	nucleus, plastid	84.42	85.41
VIT_07s0104g01790.t01	Wine grape	plastid	66.28	67.22
VIT_07s0104g01780.t01	Wine grape	plastid	68.37	66.97
KRH68154	Soybean	cytosol, plastid	63.72	64.78
KRG96415	Soybean	cytosol, plastid	62.56	63.59
Bra016968.1-P	Field mustard	cytosol, plastid	52.09	54.9
KRH50149	Soybean	cytosol, mitochondrion	8.37	52.94
Bra005844.1-P	Field mustard	cytosol	40.47	46.15
Bra024070.1-P	Field mustard	plastid	23.02	27.05

Protein Annotations

MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra007700	EnsemblPlants:Bra007700.1	EnsemblPlants:Bra007700.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	UniProt:M4CU06	PFAM:PF00400
PANTHER:PTHR11227	PANTHER:PTHR11227:SF33	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002542B34	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT3G62770 (E=1e-159) AtATG18a | AtATG18a

Coordinates

chrA09:-:30457734..30459311

Molecular Weight (calculated)

47593.5 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.248

Length

430 amino acids

Sequence
(BLAST)

001: MTTVSSPSSP WQNPDSTPAS DSDSTSPPQH SRDRGDDAES FSSMTLNAQD FNLPDRIPDS NRYLNTQTHT SPLESNSPTT TPPPSLLHLS FNQDHACFAV
101: GTARGFLILN CDPFREIFRR DFARGVAVVE MLFRCNILAL VGGGPDPQYP PNKVMIWDDH QSRCIGELSF RSEVRSVRLR RDRIVVVLEQ KIFVYNFVDL
201: KLMRQIETFA NLKGLCAVSQ GAGSMVLVCP GLQKGQVRIE HYASKRTKFV LAHDSRIACF ALTQDGSLLA TASSKGTLVR IFNTVDGTLR QEVRRGADRA
301: EIYSLAFSSN AEWLAVSSDK GTVHVFGLKV NSGVKDTPRI ASNVTRPTSP SSSLSLFKGV LPKYFSSEWS VAQFRLVEGT QYIVAFGHQK NTVVILGMDG
401: SFYRCQFDPV NGGEMSQLEY HNCLKSPSVF

Best Arabidopsis Sequence Match ( AT3G62770.1 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.