Factsheet for Bra005844.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52140	Canola	cytosol	96.82	96.82
AT5G05150.1	Thale cress	cytosol	72.94	73.53
Bra016968.1-P	Field mustard	cytosol, plastid	49.07	45.34
Bra014393.1-P	Field mustard	cytosol	45.89	42.3
Bra003509.1-P	Field mustard	nucleus	45.09	40.87
Bra007700.1-P	Field mustard	nucleus, plastid	46.15	40.47
TraesCS2B01G134400.1	Wheat	cytosol	25.73	30.31
TraesCS2D01G119500.1	Wheat	plastid	30.5	30.1
TraesCS2D01G116100.1	Wheat	cytosol	31.3	29.87
TraesCS2B01G134500.1	Wheat	cytosol	31.03	29.47
TraesCS2A01G115200.1	Wheat	cytosol	31.3	29.21
TraesCS2B01G134900.1	Wheat	cytosol	31.83	28.64
OQU90455	Sorghum	cytosol, mitochondrion	28.65	26.73
TraesCS4B01G179000.2	Wheat	plastid	31.83	26.03
Bra024070.1-P	Field mustard	plastid	23.61	24.32

Protein Annotations

EnsemblPlants:Bra005844.1	EnsemblPlants:Bra005844.1-P	EnsemblPlantsGene:Bra005844	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR11227	PANTHER:PTHR11227:SF45	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253FC65	UniProt:M4CNQ6
MapMan:19.3.2.1.3	:	:	:	:	:

Description

AT5G05150 (E=1e-153) ATATG18E, ATG18E | AtATG18e

Coordinates

chrA03:-:897142..898675

Molecular Weight (calculated)

41818.5 Da

IEP (calculated)

8.713

GRAVY (calculated)

-0.012

Length

377 amino acids

Sequence
(BLAST)

001: MSSMIFSTVR GIGSLLKSKT YDTPIDEAAK GDTKVLSVSW NQDWSGFSVG TERGFNVYSC NPIKESISRE THKSGFKIVE MLFLSNLFAL VGNGYSNSEY
101: PPNKVFIWND HTNSCFCELG FKSQVVAVKL RRKHIVVVLE RSVYVYNFTN LKVQSIIETA VNPRGLCCVS QAEAKAVMAC PGLHPGQVQV RDLKRNIVKV
201: IKAHDSDIAC MSLTLDGSLL ATASTKGTLM RIFNSLDGTL LQEFRRGMER VEIYSVAISS NLKWVAASSE KGTLHVFHLR PDILSSPKDI NHASSLSLIR
301: GILPMYSYGN ERSFAQFSLP VSTKFIVGFG PENTVLLVGI DGSFRRCRFD GEGGQMVELE HKHFFSLTQT EEAVVVM

Best Arabidopsis Sequence Match ( AT5G05150.1 )
(BLAST)

001: MNSIVSTVRG ILTLSRSETF DSPRDEAKSD LKVLSVAWNQ VCSGFIVGTN HGFNVYSCKP MIKKSISRAP HESGFKVAEM LFLSNLFAFV GNGYNNSEYP
101: PNKVFVWDDY RNCCLSELTF KSEVIAVKLA REHVVVVLKQ NIYVYTFNNL KVDRVIETLM NPKGLCCVTH VESKAVLACP GFHPGQVQVH DLRWNVIKFI
201: KAHDSAIACM TLTLDGSLLA TASTKGTLIR IFNAVDGTLL QEFRRGVERA EIYNVAISSN LKWVAASSEK GTLHVFRLRP DILSFDPASS SSFIRVILPK
301: YLYENERSFA QFSLPASTKF IVGFGSENTV LLVGIDGSFR RCKFDHADGG QMVELEHKYF FSLQETGNTM VGGV

Arabidopsis Description

ATG18EAutophagy-related protein 18e [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.