Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G134900.1 | Wheat | cytosol | 88.67 | 84.01 |
| TraesCS2B01G134400.1 | Wheat | cytosol | 39.8 | 49.38 |
| TraesCS4B01G179000.2 | Wheat | plastid | 41.31 | 35.57 |
| TraesCS1B01G132900.1 | Wheat | cytosol | 32.24 | 33.25 |
| TraesCS3B01G110900.1 | Wheat | cytosol | 33.75 | 32.13 |
| CDY52140 | Canola | cytosol | 29.72 | 31.3 |
| Bra005844.1-P | Field mustard | cytosol | 29.47 | 31.03 |
| CDX80950 | Canola | cytosol | 29.47 | 31.03 |
| AT5G05150.1 | Thale cress | cytosol | 28.97 | 30.75 |
| TraesCS3B01G490900.1 | Wheat | nucleus | 32.49 | 26.11 |
| TraesCS6B01G386200.1 | Wheat | cytosol, mitochondrion, plastid | 19.4 | 20.64 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G134500.1 | EnsemblPlantsGene:TraesCS2B01G134500 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf | PANTHER:PTHR11227 |
| PANTHER:PTHR11227:SF30 | PFAM:PF00400 | SEG:seg | SMART:SM00320 | SUPFAM:SSF50978 | MapMan:19.3.2.1.3 |
Description
No Description!
Coordinates
chr2B:-:100918166..100921471
Molecular Weight (calculated)
42601.4 Da
IEP (calculated)
7.613
GRAVY (calculated)
-0.144
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSLSPSVL ASTSSTSELP DGVVLVPAPD PLVHVAFNHH GTHFVAATAT GFHVFSCHPL DSVMHRRSSE LNVTSAQLLT RSQLALATRR PNAVSGAADD
101: HVIDFWNGMC KPKDARTNTV RSPCGAVGGF RLRGDHMLVA GEGTATLFDG VHWEKEVTTG PNPLGLCAME EPNGPATLVY ALPLPEAGSV QVRRRGRAGS
201: VSVRAHGSGV ACIALSPDGR LLATAGTRGT LLRIFSTADG TKLQELRRGT EGADIHCIAF SHDSKWLAVS SDKATVHVFS INDFNLTSST PEDDYAGDDL
301: LAAPSAPSSP ASAKANKGSS RMSFLKGYLP TYFSSKWSFA QFRIPTAWTK CSVAFDRRHP NTITIVCMDK RFYRCEFDPV KGGDMVPGVY HENFMDL
101: HVIDFWNGMC KPKDARTNTV RSPCGAVGGF RLRGDHMLVA GEGTATLFDG VHWEKEVTTG PNPLGLCAME EPNGPATLVY ALPLPEAGSV QVRRRGRAGS
201: VSVRAHGSGV ACIALSPDGR LLATAGTRGT LLRIFSTADG TKLQELRRGT EGADIHCIAF SHDSKWLAVS SDKATVHVFS INDFNLTSST PEDDYAGDDL
301: LAAPSAPSSP ASAKANKGSS RMSFLKGYLP TYFSSKWSFA QFRIPTAWTK CSVAFDRRHP NTITIVCMDK RFYRCEFDPV KGGDMVPGVY HENFMDL
001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
Arabidopsis Description
ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.