Factsheet for TraesCS4B01G179000.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90455	Sorghum	cytosol, mitochondrion	44.25	50.49
TraesCS2B01G134500.1	Wheat	cytosol	35.57	41.31
TraesCS2B01G134900.1	Wheat	cytosol	34.71	38.19
TraesCS2B01G134400.1	Wheat	cytosol	26.46	38.12
TraesCS1B01G132900.1	Wheat	cytosol	29.5	35.32
TraesCS3B01G110900.1	Wheat	cytosol	30.15	33.33
Bra005844.1-P	Field mustard	cytosol	26.03	31.83
CDY52140	Canola	cytosol	25.81	31.57
CDX80950	Canola	cytosol	25.6	31.3
AT5G05150.1	Thale cress	cytosol	24.73	30.48
TraesCS3B01G490900.1	Wheat	nucleus	30.37	28.34
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	16.27	20.11

Protein Annotations

EnsemblPlants:TraesCS4B01G179000.2	EnsemblPlantsGene:TraesCS4B01G179000	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227
PANTHER:PTHR11227:SF30	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	MapMan:19.3.2.1.3	:

Description

No Description!

Coordinates

chr4B:+:392044109..392048031

Molecular Weight (calculated)

49733.0 Da

IEP (calculated)

9.282

GRAVY (calculated)

-0.199

Length

461 amino acids

Sequence
(BLAST)

001: MGKKSFSSSP KTKSISSSPF GTKFQEIPAA SNRIWRRQSH ILVPMASTDP PAERRRPAPP LPSPIVHLSF SSDASCFVVA GTSSVHWLSC DTFSLRGLYQ
101: EKDARKTVAA AAGDMLSLKE SACATVSRVN STKFFIRRWK PGYMNYHWRY FEGEKTYTGG EDDVRAVRVH GAKTVVVLVD RLEVLGCRTK DTEDKELWLL
201: HSVVTGGNPL GLCAVSSGAS FAFVCPGARD GEVHVERWLD EGEVAAPVVA IRAHSSRLAS IAMSCDGRLV ATASVRGTLV RIFSATDGAL LQELRRGRDG
301: ADIHCIAFSP DSKWLAVSSD KATVHVFSVN IDLPSLTPED SNSPGGLQAA PAPSSPAVAT ANKRSSLSFA GGFLPGYFSS EWSSTQIRVP EGTKYLVAFG
401: SQPNTLLILG INGRFYRCRF DPEKGGVVDV RHKGTPCGSV GQDVECINFM NPSKKTSNSK P

Best Arabidopsis Sequence Match ( AT2G40810.1 )
(BLAST)

001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP

Arabidopsis Description

ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.